Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   E2C16_RS05965 Genome accession   NZ_CP038012
Coordinates   1231034..1232737 (-) Length   567 a.a.
NCBI ID   WP_115361094.1    Uniprot ID   -
Organism   Sporosarcina pasteurii strain BNCC 337394     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1226034..1237737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2C16_RS05945 (E2C16_05945) - 1226316..1228355 (-) 2040 WP_115361102.1 sigma 54-interacting transcriptional regulator -
  E2C16_RS05950 (E2C16_05950) - 1228482..1228727 (+) 246 WP_115361100.1 DUF2627 domain-containing protein -
  E2C16_RS05955 (E2C16_05955) spo0A 1228841..1229629 (-) 789 WP_115361098.1 sporulation transcription factor Spo0A -
  E2C16_RS05960 (E2C16_05960) - 1229875..1230843 (-) 969 WP_115361096.1 SpoIVB peptidase S55 domain-containing protein -
  E2C16_RS05965 (E2C16_05965) recN 1231034..1232737 (-) 1704 WP_115361094.1 DNA repair protein RecN Machinery gene
  E2C16_RS05970 (E2C16_05970) argR 1232753..1233202 (-) 450 WP_115361092.1 transcriptional regulator ArgR -
  E2C16_RS05975 (E2C16_05975) - 1233308..1234129 (-) 822 WP_115361089.1 TlyA family RNA methyltransferase -
  E2C16_RS05980 (E2C16_05980) dxs 1234126..1236027 (-) 1902 WP_115364082.1 1-deoxy-D-xylulose-5-phosphate synthase -
  E2C16_RS05985 (E2C16_05985) - 1236121..1237005 (-) 885 WP_115361087.1 polyprenyl synthetase family protein -
  E2C16_RS05990 (E2C16_05990) xseB 1236995..1237207 (-) 213 WP_243835798.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64042.04 Da        Isoelectric Point: 5.4304

>NTDB_id=351270 E2C16_RS05965 WP_115361094.1 1231034..1232737(-) (recN) [Sporosarcina pasteurii strain BNCC 337394]
MLNELTIRNFAIIKHLDVSFKKGLTVLTGETGAGKSIIIDAVQLLAGGRGSQGFIRHGADRAELEGLFMIEDPTHPVLRT
LENFGIQADEETIILRRDINANGKSVCRINGKLVTIAIMREVGASLIDIHGQHENQELMHERRHIHLLDQFAGKKMEKAY
HSYTETYSNYTKLKKKLETANENEQQIAQRIDLYSFQLTEINNANLTIGEEEALEDEQRKLQNFSRLYERLNTAYEAISG
DTHALDWVGAAMSDLEDATGVDKKLSPHYETVANSFYALQETGYELKNIIDDLEFDPARLNEVEERLALLLSLKRKYGQT
IEDILLYRDKIADELDQLMNRDERLHADQVKLAQIMKDLEVEAEELSIIRIEAAKRLEAAIMEQLQQLHMEKASFKVMIT
QKKANEFDVNGYDEVAFHIATNVGEPLKPLVAVASGGELSRLMLALKTIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKI
AMVARHSQVLCISHLPQVAAMADQHYLIKKEVKNERTMTSIENVHDKERTNELSRMLSGAETTELTLKHAEELLSLAAER
KKTLQKM

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=351270 E2C16_RS05965 WP_115361094.1 1231034..1232737(-) (recN) [Sporosarcina pasteurii strain BNCC 337394]
TTGTTAAATGAACTTACAATAAGAAACTTCGCAATCATTAAACATTTAGACGTATCTTTTAAAAAAGGTCTTACAGTGCT
AACAGGAGAAACAGGGGCAGGGAAGTCTATTATTATAGATGCTGTTCAGCTTTTGGCAGGTGGTCGAGGATCCCAAGGCT
TTATTCGACACGGGGCAGATAGGGCGGAACTAGAAGGTCTCTTTATGATAGAAGACCCTACACATCCTGTGCTACGTACG
CTAGAAAATTTCGGTATACAAGCCGATGAAGAGACCATTATATTACGACGCGATATTAATGCGAACGGAAAAAGTGTTTG
TCGTATTAACGGAAAGCTCGTTACAATCGCAATCATGCGTGAAGTTGGGGCGAGCTTAATTGATATCCATGGCCAGCATG
AAAACCAGGAGTTAATGCATGAGCGTAGACATATTCATTTACTTGATCAATTTGCTGGAAAGAAAATGGAGAAAGCTTAT
CATAGTTATACAGAAACTTACTCAAACTATACTAAGTTAAAGAAAAAGCTTGAAACTGCAAATGAAAACGAGCAGCAAAT
TGCCCAGCGTATTGACTTATATTCTTTCCAACTGACCGAAATTAATAACGCAAACCTAACGATTGGTGAGGAAGAAGCAC
TTGAAGATGAACAGCGTAAACTGCAAAACTTCAGTAGACTATACGAACGTTTAAACACTGCGTACGAAGCAATAAGTGGA
GACACACATGCGTTAGACTGGGTTGGAGCAGCGATGAGTGATTTGGAAGATGCTACTGGCGTTGATAAAAAATTATCCCC
CCACTATGAGACTGTGGCCAATAGTTTTTACGCACTCCAGGAGACTGGGTACGAGTTGAAAAACATTATCGACGATTTAG
AATTTGATCCTGCAAGACTTAATGAAGTGGAAGAACGGCTCGCATTGCTATTATCATTAAAACGAAAGTACGGGCAAACG
ATAGAGGACATTTTACTTTATCGGGATAAGATTGCAGATGAGTTAGATCAATTAATGAATCGAGATGAAAGACTCCATGC
AGATCAAGTTAAACTTGCTCAAATTATGAAAGACTTGGAAGTTGAGGCAGAGGAATTATCGATAATTCGTATTGAAGCTG
CTAAACGTTTAGAAGCAGCGATTATGGAACAACTTCAGCAATTACATATGGAAAAAGCATCCTTTAAAGTGATGATTACA
CAAAAAAAGGCAAATGAATTTGACGTCAATGGTTATGATGAAGTGGCTTTTCATATCGCAACGAATGTGGGCGAACCTTT
AAAGCCACTGGTAGCCGTCGCATCAGGAGGAGAATTGTCACGTTTAATGTTGGCTTTAAAAACAATTTTCTCGAAGCATC
AAGGCGTTACATCAATTATTTTCGATGAAGTGGATACAGGCGTTAGTGGAAGAGTAGCACAGGCAATTGCAGAAAAAATT
GCAATGGTTGCCAGACACTCCCAAGTGCTATGTATTTCTCATTTACCTCAAGTAGCTGCAATGGCGGATCAACATTATCT
CATAAAAAAAGAAGTGAAAAATGAGCGTACGATGACATCAATCGAAAATGTTCATGATAAAGAAAGAACTAATGAACTGT
CTCGTATGTTATCTGGTGCTGAAACAACAGAGTTAACATTAAAACATGCCGAGGAGTTACTTTCATTAGCTGCTGAACGC
AAAAAAACTTTACAAAAAATGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.951

100

0.538

Multiple sequence alignment