Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AHTJR_RS13835 Genome accession   NZ_CP038009
Coordinates   2936987..2939212 (+) Length   741 a.a.
NCBI ID   WP_134253113.1    Uniprot ID   A0A4P7B9C4
Organism   Acinetobacter haemolyticus strain TJR01     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2931987..2944212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS13815 (AHTJR_13815) lnt 2932749..2934308 (+) 1560 WP_005088063.1 apolipoprotein N-acyltransferase -
  AHTJR_RS13820 (AHTJR_13820) - 2934397..2934741 (-) 345 WP_004637735.1 hypothetical protein -
  AHTJR_RS13825 (AHTJR_13825) gspG 2935004..2935633 (-) 630 WP_004637734.1 type II secretion system major pseudopilin GspG -
  AHTJR_RS13830 (AHTJR_13830) gspF 2935633..2936838 (-) 1206 WP_134252927.1 type II secretion system inner membrane protein GspF -
  AHTJR_RS13835 (AHTJR_13835) priA 2936987..2939212 (+) 2226 WP_134253113.1 primosomal protein N' Machinery gene
  AHTJR_RS13840 (AHTJR_13840) - 2939253..2941070 (+) 1818 WP_134252928.1 cation:proton antiporter -
  AHTJR_RS13845 (AHTJR_13845) - 2941179..2942051 (+) 873 WP_005083783.1 Hsp33 family molecular chaperone HslO -
  AHTJR_RS13850 (AHTJR_13850) - 2942162..2942512 (-) 351 WP_005083785.1 hypothetical protein -
  AHTJR_RS13855 (AHTJR_13855) - 2942676..2943638 (+) 963 WP_134252929.1 DnaJ C-terminal domain-containing protein -
  AHTJR_RS13860 (AHTJR_13860) - 2943650..2943976 (+) 327 WP_004637727.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84280.30 Da        Isoelectric Point: 8.6567

>NTDB_id=351249 AHTJR_RS13835 WP_134253113.1 2936987..2939212(+) (priA) [Acinetobacter haemolyticus strain TJR01]
MPSENSNAILYRIRVALPVYVYDTFDYTVSAEQYQQAQIGARVAVSFGRQNLVGIIVEKIDPNQVFTGQFKLKAITELLD
KEAILDQHVLTLMTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIVPNDDPNALLKRSPKQYEAYQILKIHPHG
TTENVLNLSGVETATLKALEKKGLVECCLEPHDFSPTPVQLAQVPLTANEDQKRAIQQILKEQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
PHLGVIILDEEHDLSYKQQEGFRYHTRDVALYRGYLQHCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
IDLKIAKKKHGISQNLIEQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGNVYLQSLRPDHPMLTTLIEHDYRTVAKQMLAERKLAML
PPYRYTVLVRVESKDREYSQNFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=351249 AHTJR_RS13835 WP_134253113.1 2936987..2939212(+) (priA) [Acinetobacter haemolyticus strain TJR01]
ATGCCTAGCGAAAATTCTAACGCCATTTTGTACCGTATTCGAGTTGCCCTACCCGTATATGTGTATGACACGTTTGACTA
TACGGTCAGTGCCGAACAGTATCAACAAGCACAGATTGGAGCGCGTGTTGCAGTGTCGTTCGGACGACAAAATCTCGTAG
GTATCATTGTTGAAAAAATTGATCCTAATCAAGTTTTCACAGGTCAATTTAAACTGAAAGCAATTACTGAATTACTTGAT
AAAGAAGCAATATTAGATCAACACGTTTTAACTTTGATGACATGGTCTGCTCAGTATTATCAATTCCCAATTGGCGAAGT
GATGCAAAGTGCCCTCCCCACACTACTCAGACAAGGGCGTGCATTAGACATTTTATTTCATCTGTGGAAAATCGTGCCAA
ATGATGATCCGAATGCATTATTGAAACGCTCTCCAAAACAATATGAGGCGTATCAAATCTTAAAAATACATCCTCATGGC
ACCACTGAAAATGTCTTGAACCTCAGTGGTGTTGAAACTGCAACACTGAAAGCTTTAGAAAAGAAAGGGTTGGTTGAGTG
TTGTCTGGAACCACATGATTTTAGCCCCACACCTGTACAATTGGCGCAAGTACCACTCACAGCCAATGAGGATCAAAAAA
GAGCGATTCAACAAATCCTCAAAGAGCAGCATCATTACCAAGCATTTTTACTGGATGGCTTAACAGGCAGTGGCAAAACT
GAAGTTTATCTGCAAGTCATGCATGAAGTATTAAAGCAGGGTAAGCAGGTGTTGGTACTGGTTCCAGAAATCGGCCTTAC
CCCTCAAACTGTCGCTCGCTTTAAATCACGTTTTCATTGTGATATTGCTTTATTACATTCAGGTTTAAATGACTCGAAAC
GCTTACAAGCATGGCAACACGCGCAAACAGGTAAAGCTTCTATTGTGATTGGGACCCGTTCTGCGATCTACACGCCGCTT
CCTCATCTCGGAGTGATTATCCTCGATGAAGAGCATGATCTTTCTTATAAACAGCAAGAAGGCTTTCGTTATCATACCCG
TGATGTAGCGCTCTACAGAGGATACTTACAACATTGTCCTGTGATTCTTGGATCTGCAACACCGAGTATCGATAGCTATC
ATCTGGTCGAGTCAGGCAAACTACATCTACTGGAACTCAATCAACGTGCTGGCGTCGCTGTCCTGCCTAAAATGCATGTG
ATTGATTTAAAAATTGCCAAGAAAAAACATGGTATCAGCCAAAATTTAATTGAGCAGATCAAACTCACCTTAGAACGCAA
AGAACAGGTGTTGATCTTTCTCAACCGTCGGGGTTATGCACCGATTCTGATGTGTGAAAGTTGTGGTTGGCAAGCCAATT
GCCCCCATTGTGATGCGCATTTCACCCTTCATTCTCAGCCTTATCATTATTTACATTGTCATCATTGCGGCACCATCAAT
CGCCTCCCCGATCATTGCCCAGCATGCCAAAAACAAAGTTTAAAAACGATTGGCGCTGGAACGGCAAAACTTGAAGAGCA
TTTACAAGAGTTATTTCCTCACAATGAAGTGATTCGAGTTGATCGTGACAGTACCAGCCGTGTCGGAAGTTGGCAGAAAA
TTTATGACCGTATCCAACAAAATAAACCGAGTATTTTATTGGGCACACAAATGCTTGCTAAAGGGCATCATTTTCCACAT
GTGACTTTGGTGGCTATTTTAGATATTGACGCTGGTTTACTGAGCGTGGATATCCGCGCCCCTGAACGTACCGCACAATT
AATAGTACAAGTGGCCGGACGTGCTGGACGAGGCGAACATAAAGGGAATGTCTATTTACAAAGTCTTCGCCCTGATCATC
CTATGCTCACCACATTAATTGAACATGACTATCGTACGGTTGCCAAACAAATGCTGGCTGAGCGTAAACTTGCAATGCTC
CCTCCGTATCGTTATACAGTATTGGTACGTGTTGAATCGAAAGATCGAGAATATAGCCAGAACTTTTTGGCGGATATTGC
GCAACAACTGAGAACAATGGCTGGCGATTTAGTTGATATTTGGGGGCCAATTCCCGCACCGATGGAACGTAAAGCTGGAC
GTTATCGTGCCCACATGGTGATTTTGTCGGCCGATCGCGCCAAACTGCATTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAGCACCAACTCAGGCTATCCATCGATGTTGATCCACAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7B9C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.041

99.19

0.814

Multiple sequence alignment