Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   AHTJR_RS01625 Genome accession   NZ_CP038009
Coordinates   352446..352925 (+) Length   159 a.a.
NCBI ID   WP_134251380.1    Uniprot ID   A0A4V1ASC9
Organism   Acinetobacter haemolyticus strain TJR01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347446..357925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS01615 (AHTJR_01615) pilX 347524..348249 (+) 726 WP_113996606.1 pilus assembly protein PilX Machinery gene
  AHTJR_RS01620 (AHTJR_01620) - 348263..352462 (+) 4200 WP_134251378.1 pilus assembly protein -
  AHTJR_RS01625 (AHTJR_01625) comE 352446..352925 (+) 480 WP_134251380.1 type IV pilin protein Machinery gene
  AHTJR_RS01630 (AHTJR_01630) rpsP 353091..353348 (+) 258 WP_004641253.1 30S ribosomal protein S16 -
  AHTJR_RS01635 (AHTJR_01635) rimM 353367..353915 (+) 549 WP_004641251.1 ribosome maturation factor RimM -
  AHTJR_RS01640 (AHTJR_01640) trmD 353961..354701 (+) 741 WP_004641249.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AHTJR_RS01645 (AHTJR_01645) rplS 354838..355209 (+) 372 WP_004641247.1 50S ribosomal protein L19 -
  AHTJR_RS01650 (AHTJR_01650) - 355272..356246 (-) 975 WP_008941167.1 esterase/lipase family protein -
  AHTJR_RS01655 (AHTJR_01655) - 356351..357397 (-) 1047 WP_134251382.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17797.60 Da        Isoelectric Point: 9.4060

>NTDB_id=351231 AHTJR_RS01625 WP_134251380.1 352446..352925(+) (comE) [Acinetobacter haemolyticus strain TJR01]
MKVMNRRSGFTLIELMITVAIIAILAVIAIPSYDIYIRKADLSTAQQEMHKIAALLEQHRTRNFSYEGFILRDPVRNEGP
YADVDNASKTMLLLPLNASSGKQKFTLILTVDSQTWSLKAESQNPRNYSLLMTSTGLKCKTKTPANITNQSCGLASEEW

Nucleotide


Download         Length: 480 bp        

>NTDB_id=351231 AHTJR_RS01625 WP_134251380.1 352446..352925(+) (comE) [Acinetobacter haemolyticus strain TJR01]
ATGAAAGTAATGAATAGGCGATCTGGATTTACTCTGATTGAGCTGATGATCACAGTGGCGATCATTGCTATCCTAGCAGT
GATCGCCATCCCGAGTTATGACATTTATATTCGTAAAGCAGACTTATCAACAGCTCAACAAGAGATGCATAAAATTGCTG
CATTATTAGAACAACATCGAACGCGTAACTTCAGTTATGAGGGCTTCATATTAAGAGATCCTGTGCGCAATGAAGGACCC
TATGCAGATGTGGATAATGCAAGCAAGACCATGTTGCTTTTACCTTTAAATGCATCGAGTGGTAAGCAAAAATTTACCTT
GATTTTAACGGTTGATTCACAGACTTGGTCACTTAAGGCTGAAAGCCAAAATCCACGTAATTACTCCTTACTTATGACCA
GTACTGGTCTAAAATGTAAGACCAAAACACCAGCCAATATCACCAATCAAAGTTGTGGTTTAGCTTCTGAAGAGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-126)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1ASC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

45.349

100

0.491

Multiple sequence alignment