Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DCC84_RS29555 Genome accession   NZ_CP038001
Coordinates   6257748..6259115 (-) Length   455 a.a.
NCBI ID   WP_003215821.1    Uniprot ID   A0A1R0GH56
Organism   Pseudomonas sp. SXM-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6252748..6264115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC84_RS29535 (DCC84_29535) yjiA 6253704..6254663 (-) 960 WP_003215828.1 GTPase -
  DCC84_RS29540 (DCC84_29540) - 6254811..6255008 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  DCC84_RS29545 (DCC84_29545) - 6255024..6257090 (-) 2067 WP_003215826.1 carbon starvation CstA family protein -
  DCC84_RS29550 (DCC84_29550) - 6257264..6257632 (+) 369 WP_087695251.1 PilZ domain-containing protein -
  DCC84_RS29555 (DCC84_29555) radA 6257748..6259115 (-) 1368 WP_003215821.1 DNA repair protein RadA Machinery gene
  DCC84_RS29560 (DCC84_29560) - 6259151..6259690 (-) 540 WP_023659179.1 ankyrin repeat domain-containing protein -
  DCC84_RS29565 (DCC84_29565) katB 6259796..6261337 (-) 1542 WP_003215817.1 catalase KatB -
  DCC84_RS29570 (DCC84_29570) mscL 6261624..6262040 (+) 417 WP_003215816.1 large-conductance mechanosensitive channel protein MscL -
  DCC84_RS29575 (DCC84_29575) - 6262081..6262857 (-) 777 WP_087695254.1 ferredoxin--NADP reductase -
  DCC84_RS29580 (DCC84_29580) - 6263263..6263973 (+) 711 WP_003215813.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48863.40 Da        Isoelectric Point: 6.8987

>NTDB_id=351190 DCC84_RS29555 WP_003215821.1 6257748..6259115(-) (radA) [Pseudomonas sp. SXM-1]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAVAPSGRSGWTGQQTQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=351190 DCC84_RS29555 WP_003215821.1 6257748..6259115(-) (radA) [Pseudomonas sp. SXM-1]
ATGGCAAAGGCCAAGCGCATGTATGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACGGAATG
CGGTGCGTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGCGCCGTGGCCCCCAGTGGCCGTTCCGGCTGGACCG
GGCAACAAACCCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGTTTCTCCACCGCTTCCGGTGAACTG
GACCGGGTGCTGGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGTAAGTCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGCGAAGAATCCCAGCAGCAGGTGG
CCATGCGTGCGCGCCGCCTGGGCTTGCCTCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACCGCGCGCCTGGAAAAGCCCAAGGTGATGGTGATCGATTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGGGAAAGTGCCGCGCTGCTGGTGCGCTATGCGAAACAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTGACGAAAGAAGGCGCACTGGCCGGCCCGCGGGTGCTGGAACACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGACGGGCGGTTGCGTTTGTTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAGTTGGGTGTGTTCGC
CATGACTGACCGGGGCTTGAAAGAAGTCTCCAACCCGTCAGCGATTTTTCTTACCCGCGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCAACGTGGGAAGGGACCCGACCGATGCTGGTGGAAGTCCAGGCGCTGGTGGACGACAGCCACTTGGCC
AACCCGCGTCGTGTCACCCTGGGCCTGGACCAGAACCGGCTGGCGATGTTGCTGGCGGTATTGCACCGCCACGGCGGCAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCGTCTGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGCGAAGTGGGCCTGTCGGGT
GAAGTGCGCCCGGTGCCCAGTGGCCAGGAGCGCTTGAAAGAAGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAAATGCCACCGGGGCTGCAAGTGATCGGGGTAACGCGCCTGGAGCAGGCGCTGGATGCCCTGT
TCGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0GH56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473

Multiple sequence alignment