Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   GL185_RS04830 Genome accession   NZ_CP046357
Coordinates   972309..972575 (-) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 525     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 967309..977575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL185_RS04820 (GL185_04870) metF 968869..969735 (-) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  GL185_RS04825 (GL185_04875) metE 969799..972048 (-) 2250 WP_024477912.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GL185_RS04830 (GL185_04880) HI0659 972309..972575 (-) 267 WP_001808618.1 helix-turn-helix transcriptional regulator Machinery gene
  GL185_RS04835 (GL185_04885) - 972659..973147 (-) 489 Protein_968 IS30 family transposase -
  GL185_RS04840 (GL185_04890) - 973303..974304 (+) 1002 WP_024477913.1 endonuclease/exonuclease/phosphatase family protein -
  GL185_RS04845 (GL185_04895) pheT 974372..976777 (-) 2406 WP_061714000.1 phenylalanine--tRNA ligase subunit beta -
  GL185_RS04850 (GL185_04900) - 976854..977363 (-) 510 WP_000619943.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=350981 GL185_RS04830 WP_001808618.1 972309..972575(-) (HI0659) [Streptococcus pneumoniae strain 525]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=350981 GL185_RS04830 WP_001808618.1 972309..972575(-) (HI0659) [Streptococcus pneumoniae strain 525]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534