Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NBC122_RS05725 Genome accession   NZ_CP037954
Coordinates   1240089..1241435 (+) Length   448 a.a.
NCBI ID   WP_133439457.1    Uniprot ID   A0A4P6ZEN8
Organism   Chryseobacterium salivictor strain NBC 122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1235089..1246435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBC122_RS05710 (NBC122_01157) yidC 1235672..1237483 (-) 1812 WP_133439454.1 membrane protein insertase YidC -
  NBC122_RS05715 (NBC122_01158) - 1237648..1239255 (-) 1608 WP_133439455.1 CTP synthase -
  NBC122_RS05720 (NBC122_01159) - 1239469..1239996 (+) 528 WP_133439456.1 YceI family protein -
  NBC122_RS05725 (NBC122_01160) radA 1240089..1241435 (+) 1347 WP_133439457.1 DNA repair protein RadA Machinery gene
  NBC122_RS05730 (NBC122_01161) - 1241509..1241739 (+) 231 WP_133439458.1 hypothetical protein -
  NBC122_RS05735 (NBC122_01162) - 1241729..1242073 (+) 345 WP_133439459.1 type II toxin-antitoxin system PemK/MazF family toxin -
  NBC122_RS05740 (NBC122_01163) - 1242073..1242645 (+) 573 WP_133439460.1 ACP phosphodiesterase -
  NBC122_RS05745 (NBC122_01164) - 1242642..1243157 (-) 516 WP_133439461.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49761.44 Da        Isoelectric Point: 6.1984

>NTDB_id=350964 NBC122_RS05725 WP_133439457.1 1240089..1241435(+) (radA) [Chryseobacterium salivictor strain NBC 122]
MAKVKTAYVCQNCGTQYPQWLGQCKNCEEWNTLVEEIVEKSVTKSFIDRSKQHIINIIEVETFEEPRITTPSEELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLFTETSVEKILHEAKKLK
PDFLIVDSIQTLQSQLIESSPGTVSQIRECSNEIIKFSKETNTPTFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRASKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLIEIQALVSTAVYGTPQRSC
TGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTGDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPIP
QIEQRISEAEKLGYEKIFVSNLNKIPKKKYGIIVEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=350964 NBC122_RS05725 WP_133439457.1 1240089..1241435(+) (radA) [Chryseobacterium salivictor strain NBC 122]
ATGGCAAAAGTGAAAACGGCATACGTCTGTCAAAATTGTGGAACGCAGTATCCGCAGTGGCTCGGACAGTGCAAGAATTG
TGAGGAGTGGAATACTTTGGTGGAAGAAATTGTGGAAAAATCAGTCACAAAAAGTTTTATCGACCGCTCGAAACAGCATA
TCATCAATATTATCGAGGTCGAAACTTTCGAAGAACCCCGGATTACAACGCCTTCTGAAGAACTGAACCGCGTTCTCGGT
GGCGGAATTGTTTTAGGCTCCGTCACTTTAATCGGTGGCGAACCGGGAATCGGGAAATCTACGCTGTTGCTTCAACTCGC
TTTGAAAATGAAGAAGAAGATTCTTTATGTTTCCGGTGAGGAAAGCGCGTCGCAGATAAAAATGCGTGCTGACCGACTGA
CAGAACTGCAAAATCCGAACTGTTTTCTTTTTACCGAAACTTCGGTAGAAAAGATTCTGCACGAAGCAAAAAAACTGAAG
CCGGATTTTTTGATCGTCGATTCTATTCAAACCTTGCAAAGTCAACTCATCGAAAGTTCGCCCGGAACGGTTTCGCAGAT
TCGCGAGTGTTCGAACGAGATCATTAAATTTTCTAAAGAAACCAATACACCGACTTTTTTAGTCGGACATATTACAAAAG
ACGGTCAGATCGCCGGTCCGAAAGTTTTGGAGCACATGGTAGATGTGGTGCTGAATTTTGACGGCGACCGAAATCATTTA
TTCCGATTGTTGAGAGCGAGTAAAAACCGTTTTGGTTCCACCGCCGAAATCGGGATTTATGAAATGGTTTCGCAAGGTTT
AAAGGAGATCAAAAATCCTTCTGAGATTTTGATTACCAAGAAATTCGAAGAACTTTCCGGGAATTCTGTCGCGGTAACTT
TAGAAGGAAACCGGCCGATGCTGATAGAAATTCAGGCTTTGGTAAGTACCGCAGTTTATGGAACGCCGCAAAGAAGCTGC
ACCGGTTTTGACTCGAAAAGGCTCAATATGCTTTTGGCGGTTTTAGAAAAAAGAGCTGGTTTTCAGTTGGGCGCAAAAGA
TGTTTTCCTGAATATTACGGGCGGAATAAAAACGGGAGATCCGGCTTTGGATTTGGCGGTGGTCGCTTCGATTCTTTCTT
CGAATGAAGATATTGCAATATCGGAACATTTCTGTTTTGCCGGAGAAATCGGGTTGAGCGGAGAAATCCGTCCGATTCCG
CAGATTGAACAAAGGATTTCGGAAGCGGAGAAATTGGGTTATGAGAAAATATTTGTTTCTAATTTAAATAAAATTCCGAA
AAAGAAATATGGGATTATTGTGGAAGAAGTGAGTAAGATTGAGGATTTTCATGAACGGCTGTTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-422)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6ZEN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.009

100

0.484
  radA Streptococcus mitis NCTC 12261

47.473

100

0.482
  radA Streptococcus pneumoniae Rx1

49.173

94.42

0.464
  radA Streptococcus pneumoniae D39

49.173

94.42

0.464
  radA Streptococcus pneumoniae R6

49.173

94.42

0.464
  radA Streptococcus pneumoniae TIGR4

49.173

94.42

0.464
  radA Streptococcus mitis SK321

49.173

94.42

0.464

Multiple sequence alignment