Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E2H98_RS12945 Genome accession   NZ_CP037953
Coordinates   2883462..2884829 (+) Length   455 a.a.
NCBI ID   WP_133588842.1    Uniprot ID   A0A4R6UTX9
Organism   Permianibacter aggregans strain HW001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2878462..2889829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2H98_RS12935 (E2H98_12875) - 2879785..2882067 (-) 2283 WP_133588846.1 PilZ domain-containing protein -
  E2H98_RS12940 (E2H98_12880) - 2882402..2883265 (+) 864 WP_133588844.1 choice-of-anchor L domain-containing protein -
  E2H98_RS12945 (E2H98_12885) radA 2883462..2884829 (+) 1368 WP_133588842.1 DNA repair protein RadA Machinery gene
  E2H98_RS12950 (E2H98_12890) - 2884883..2885266 (-) 384 WP_133588840.1 PilZ domain-containing protein -
  E2H98_RS12955 (E2H98_12895) motA 2885402..2886253 (+) 852 WP_133588838.1 flagellar motor stator protein MotA -
  E2H98_RS12960 (E2H98_12900) motB 2886263..2887243 (+) 981 WP_133588836.1 flagellar motor protein MotB -
  E2H98_RS12965 (E2H98_12905) rsgA 2887247..2888218 (-) 972 WP_133588834.1 small ribosomal subunit biogenesis GTPase RsgA -
  E2H98_RS12970 (E2H98_12910) - 2888220..2888567 (-) 348 WP_133588832.1 4a-hydroxytetrahydrobiopterin dehydratase -
  E2H98_RS12975 (E2H98_12915) orn 2888629..2889174 (+) 546 WP_133588830.1 oligoribonuclease -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48321.42 Da        Isoelectric Point: 7.7315

>NTDB_id=350946 E2H98_RS12945 WP_133588842.1 2883462..2884829(+) (radA) [Permianibacter aggregans strain HW001]
MAKNKTVYACAACGAISPKWQGQCADCGQWNTLSEQVEVKAPARSGRFAGFAGAASTVTRLPEVQTGNIQRWPTGSGELD
RVLGGGLVPGSVVLIGGDPGIGKSTLLTQTLCLLAGQGPALYVTGEESLEQVSLRAKRLGLGESNLALLAETQVERIVAV
AEQEKPQVMVVDSVQTLYTEQLQSAPGGVSQVRESAALLTRFAKQTGTALFLVGHVTKDGALAGPRVLEHMVDAVLYFEG
ESDGRFRLVRAVKNRFGAVNELGVFAMTETGLKEVKNPSAIFLTRNSQPVPGSLVTATWEGTRPLLVEVQALVDESRAGH
PRRVAVGLDSNRLAMLLAVLHRHGGVQSYDQDVFLNVVGGVRVLETSADLAQLLAVVSSLRNRPLPTDLIAFAEVGLAGE
LRPVPNGQERLKEAAKHGFRRAIVPLGNAPKLPPEGMTVQAVRSLHEALLAAYQE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=350946 E2H98_RS12945 WP_133588842.1 2883462..2884829(+) (radA) [Permianibacter aggregans strain HW001]
ATGGCCAAGAATAAAACCGTTTACGCTTGCGCTGCCTGTGGCGCCATCAGTCCGAAATGGCAAGGGCAGTGTGCCGATTG
TGGCCAGTGGAATACGCTCAGCGAACAGGTTGAAGTGAAAGCGCCGGCGCGCAGCGGCCGTTTTGCCGGATTCGCCGGAG
CGGCGTCGACAGTCACCCGCTTGCCGGAAGTGCAAACCGGCAATATCCAGCGCTGGCCAACCGGTTCCGGCGAGCTGGAT
CGAGTCTTGGGCGGTGGCCTGGTGCCGGGTTCGGTGGTGCTGATTGGCGGTGATCCGGGCATTGGTAAATCGACACTTTT
GACGCAGACACTTTGCCTATTGGCCGGGCAGGGGCCGGCACTGTATGTCACCGGCGAAGAAAGCCTGGAGCAGGTTTCGC
TACGTGCCAAACGCTTGGGGCTCGGCGAGTCCAATTTGGCGCTGCTGGCTGAAACGCAAGTCGAGCGCATTGTTGCCGTC
GCGGAACAGGAAAAACCGCAAGTGATGGTCGTCGACTCGGTGCAGACGCTTTACACCGAACAACTGCAATCGGCGCCCGG
TGGCGTTTCCCAGGTGCGGGAAAGTGCGGCCTTGCTGACCCGTTTTGCCAAGCAGACCGGTACCGCATTGTTTCTGGTCG
GCCATGTCACCAAAGACGGCGCTTTGGCCGGCCCGCGGGTACTGGAGCATATGGTTGATGCCGTGCTCTATTTCGAAGGT
GAAAGCGACGGCCGTTTCCGCTTGGTGCGAGCAGTGAAAAATCGTTTTGGCGCGGTCAACGAACTCGGCGTGTTTGCCAT
GACCGAAACCGGCCTGAAAGAGGTCAAGAATCCGTCGGCGATTTTTCTGACCCGCAACAGCCAACCGGTGCCCGGTTCGC
TGGTCACGGCGACCTGGGAAGGTACCCGGCCGTTATTGGTCGAAGTGCAAGCGCTGGTCGATGAAAGTCGGGCCGGGCAT
CCGCGCCGGGTGGCGGTCGGTTTGGACAGCAACCGCTTGGCGATGTTGCTGGCAGTGTTGCACCGTCATGGCGGTGTACA
GTCCTACGATCAGGATGTGTTCCTGAACGTCGTTGGTGGTGTGCGAGTGTTGGAAACCAGTGCCGATCTGGCGCAGCTGC
TGGCCGTGGTGTCGTCACTGCGCAACCGGCCTTTGCCTACCGACTTGATTGCCTTCGCGGAAGTCGGTTTGGCCGGAGAG
TTGCGGCCGGTACCGAATGGCCAGGAGCGATTGAAAGAGGCCGCCAAACATGGATTCCGACGCGCCATCGTGCCGCTCGG
CAATGCACCGAAACTGCCGCCGGAAGGTATGACTGTGCAGGCCGTGCGTTCCTTGCACGAAGCGTTGCTGGCGGCTTATC
AGGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R6UTX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

100

0.499
  radA Streptococcus mitis SK321

45.374

99.78

0.453
  radA Streptococcus mitis NCTC 12261

45.154

99.78

0.451
  radA Streptococcus pneumoniae Rx1

45.154

99.78

0.451
  radA Streptococcus pneumoniae D39

45.154

99.78

0.451
  radA Streptococcus pneumoniae R6

45.154

99.78

0.451
  radA Streptococcus pneumoniae TIGR4

45.154

99.78

0.451

Multiple sequence alignment