Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EQG49_RS04810 Genome accession   NZ_CP037940
Coordinates   1051481..1052917 (-) Length   478 a.a.
NCBI ID   WP_133362912.1    Uniprot ID   A0A4P6YT66
Organism   Periweissella cryptocerci strain 26KH-42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1046481..1057917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQG49_RS04795 (EQG49_04795) - 1047026..1048333 (+) 1308 WP_133362909.1 ISL3 family transposase -
  EQG49_RS04800 (EQG49_04800) gltX 1048461..1049957 (-) 1497 WP_165964791.1 glutamate--tRNA ligase -
  EQG49_RS04805 (EQG49_04805) - 1050132..1051262 (-) 1131 WP_133362911.1 PIN/TRAM domain-containing protein -
  EQG49_RS04810 (EQG49_04810) radA 1051481..1052917 (-) 1437 WP_133362912.1 DNA repair protein RadA Machinery gene
  EQG49_RS04815 (EQG49_04815) - 1052941..1053477 (-) 537 WP_133362913.1 dUTP diphosphatase -
  EQG49_RS04820 (EQG49_04820) - 1053682..1053963 (+) 282 WP_133362914.1 GNAT family N-acetyltransferase -
  EQG49_RS04825 (EQG49_04825) rpiA 1054062..1054745 (+) 684 WP_133362915.1 ribose-5-phosphate isomerase RpiA -
  EQG49_RS04830 (EQG49_04830) - 1054865..1055146 (-) 282 WP_133362916.1 hypothetical protein -
  EQG49_RS04835 (EQG49_04835) - 1055345..1055818 (-) 474 WP_133362917.1 SMI1/KNR4 family protein -
  EQG49_RS04840 (EQG49_04840) - 1055837..1056511 (-) 675 WP_207668559.1 T6SS immunity protein Tdi1 domain-containing protein -
  EQG49_RS04845 (EQG49_04845) - 1056563..1057060 (-) 498 WP_133362918.1 hypothetical protein -
  EQG49_RS04850 (EQG49_04850) - 1057107..1057502 (-) 396 WP_133362919.1 immunity protein YezG family protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52305.04 Da        Isoelectric Point: 5.9019

>NTDB_id=350779 EQG49_RS04810 WP_133362912.1 1051481..1052917(-) (radA) [Periweissella cryptocerci strain 26KH-42]
MAKVKTQFICSNCGYNSPKYLGRCPNCGEWGTLVEEKIQPDVVDRKSRVSLTGQLAKVEKIDKVAVQDQPRVKVELGELN
RVLGGGVVPGSMILIGGDPGIGKSTLLLQVSGQLAKTGGLVLYVSGEESAVQIKMRADRLGVGGTDFYLYPETDMSLIRK
QIEELKPDYVIIDSVQTMQEPDITSAVGSVSQIREVTAELLQIAKTNGITIFIVGHVTKDGAIAGPKMLEHMVDTVLYFE
GDMHHSYRILRAVKNRFGSTNELGIFEMKTNGLNEVDNPSEIFLEERIDGATGSAIVVSMEGTRPILVEMQALITPSVFG
NAQRTASGLDRNRVSLIMAVLEKRANMLLQNQDAYLKAAGGVKLDEPAIDLAIAVAVASSYRDKETKMGDAFIGEIGLTG
EIRRVSRIEERVAEAEKLGFKRVFIPENNLKGWNPKGKIQVVGVATISEALRRAFDEDGNDYKARNKTNPYRISQENE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=350779 EQG49_RS04810 WP_133362912.1 1051481..1052917(-) (radA) [Periweissella cryptocerci strain 26KH-42]
ATGGCAAAAGTAAAAACACAATTTATTTGTTCTAACTGTGGCTACAACTCACCTAAGTATCTAGGACGGTGTCCTAACTG
TGGTGAATGGGGCACGTTAGTTGAAGAAAAAATTCAACCAGATGTAGTTGATCGTAAGAGCCGGGTTAGTTTGACTGGCC
AATTAGCCAAAGTTGAAAAAATTGACAAAGTCGCAGTGCAAGATCAACCACGGGTAAAAGTTGAACTTGGGGAACTTAAC
CGCGTCTTAGGCGGTGGGGTTGTTCCTGGTTCAATGATTTTAATCGGTGGTGATCCTGGGATTGGTAAATCAACTTTGCT
ACTACAAGTATCTGGGCAACTAGCAAAAACTGGTGGGTTGGTCCTGTATGTTTCTGGTGAAGAAAGTGCCGTCCAAATCA
AGATGCGCGCTGATCGCTTAGGCGTTGGTGGTACTGATTTCTACTTGTACCCAGAAACGGATATGAGTTTAATCCGGAAG
CAAATTGAAGAATTAAAACCAGATTACGTAATAATTGATTCCGTCCAAACCATGCAAGAACCAGATATTACTTCTGCGGT
CGGTTCCGTATCACAAATTCGTGAAGTAACCGCGGAATTATTACAGATTGCCAAGACGAATGGGATTACAATTTTCATTG
TCGGGCACGTGACCAAGGACGGCGCAATTGCGGGTCCTAAAATGCTCGAACACATGGTGGACACGGTGCTGTATTTTGAA
GGTGACATGCACCACTCGTACCGGATTTTACGGGCAGTCAAAAATCGGTTTGGCTCGACAAATGAACTTGGGATTTTTGA
GATGAAAACGAATGGGCTGAACGAAGTTGATAACCCATCAGAAATCTTCTTGGAAGAACGAATTGATGGGGCAACTGGTT
CGGCAATCGTGGTTTCAATGGAAGGAACACGGCCAATTTTAGTTGAAATGCAGGCACTGATTACGCCGTCGGTATTTGGT
AATGCTCAGCGGACGGCGTCAGGACTTGATCGTAATCGGGTATCGTTAATTATGGCGGTCCTCGAAAAACGTGCGAACAT
GCTACTGCAAAACCAAGATGCGTATTTGAAAGCAGCTGGTGGTGTAAAACTGGATGAACCCGCCATTGATTTGGCGATTG
CTGTGGCCGTGGCCTCATCATATCGTGATAAGGAAACGAAGATGGGGGATGCGTTCATCGGTGAAATTGGTTTAACAGGT
GAAATTCGCCGCGTTAGTCGTATCGAAGAACGGGTCGCAGAAGCCGAAAAACTAGGCTTCAAACGCGTGTTCATTCCTGA
AAACAATCTGAAGGGCTGGAATCCCAAAGGCAAAATTCAAGTCGTTGGGGTCGCAACAATCAGTGAAGCATTACGGCGCG
CCTTTGATGAAGATGGCAATGATTACAAAGCTAGAAACAAAACGAACCCATATCGGATTAGCCAAGAAAACGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6YT66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.033

95.188

0.638
  radA Streptococcus mitis SK321

67.033

95.188

0.638
  radA Streptococcus pneumoniae Rx1

66.813

95.188

0.636
  radA Streptococcus pneumoniae D39

66.813

95.188

0.636
  radA Streptococcus pneumoniae R6

66.813

95.188

0.636
  radA Streptococcus pneumoniae TIGR4

66.813

95.188

0.636
  radA Bacillus subtilis subsp. subtilis str. 168

64.551

95.607

0.617

Multiple sequence alignment