Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EPD59_RS21220 Genome accession   NZ_CP037922
Coordinates   4679307..4680692 (-) Length   461 a.a.
NCBI ID   WP_133274518.1    Uniprot ID   -
Organism   Hymenobacter radiodurans strain 17J36-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4674307..4685692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPD59_RS24265 - 4674831..4674914 (-) 84 WP_394347234.1 CHRD domain-containing protein -
  EPD59_RS24270 - 4675010..4675291 (-) 282 Protein_4197 CHRD domain-containing protein -
  EPD59_RS21195 - 4675453..4675767 (-) 315 WP_165963690.1 CHRD domain-containing protein -
  EPD59_RS21200 - 4675842..4676312 (-) 471 WP_133274514.1 CHRD domain-containing protein -
  EPD59_RS21205 - 4676382..4676846 (-) 465 WP_133274515.1 CHRD domain-containing protein -
  EPD59_RS21210 - 4677083..4677445 (+) 363 WP_133274516.1 hypothetical protein -
  EPD59_RS21215 - 4677515..4678993 (-) 1479 WP_133274517.1 TlpA disulfide reductase family protein -
  EPD59_RS21220 radA 4679307..4680692 (-) 1386 WP_133274518.1 DNA repair protein RadA Machinery gene
  EPD59_RS21225 - 4680968..4682356 (+) 1389 WP_133274519.1 sensor histidine kinase -
  EPD59_RS23970 - 4682517..4683131 (+) 615 WP_317128426.1 response regulator -
  EPD59_RS23975 - 4683104..4684168 (+) 1065 WP_317128427.1 FAD-dependent oxidoreductase -
  EPD59_RS21235 - 4684252..4685085 (+) 834 WP_133274520.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50065.24 Da        Isoelectric Point: 6.1240

>NTDB_id=350625 EPD59_RS21220 WP_133274518.1 4679307..4680692(-) (radA) [Hymenobacter radiodurans strain 17J36-26]
MAKIKTLYFCQKCGAQSAKWIGRCPSCGEWNTYVEEVVEKENNQSTGSWKPPTASPGAKTSAKPRPIGEIHYEEEARIDT
HDGELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMSLRQLKVLYISGEESEQQIKMRAERLGDQHPGCYILTETNTQ
NIFRQIDQLQPNVVVVDSIQTLQSGLVESGAGSVSQVRECTAELLKYAKETGVPVLLIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTIKNRFGSTSELGIYEMQGAGLRQVSNPSEILLSQRTETLSGIAIGATLEGNRPLLVEVQALVSP
ATYGTPQRSSTGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLEDPALDLAVCAAVVSSLNDIPLSGETCLAAEV
GLSGEIRAVSRLDQRLSESEKLGFQEMYISQFNARGLDLGRFGIRVHPVGRLDEVLTGLFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=350625 EPD59_RS21220 WP_133274518.1 4679307..4680692(-) (radA) [Hymenobacter radiodurans strain 17J36-26]
ATGGCCAAAATCAAGACCCTTTATTTCTGTCAAAAGTGTGGTGCTCAGTCAGCCAAATGGATTGGCCGCTGCCCATCGTG
TGGGGAGTGGAATACCTACGTGGAGGAAGTAGTCGAAAAAGAAAATAACCAGTCTACCGGCTCCTGGAAGCCGCCTACAG
CTTCACCCGGCGCCAAAACCAGCGCCAAGCCCCGCCCCATCGGCGAGATTCACTACGAGGAGGAAGCCCGTATCGACACG
CACGACGGCGAGCTAAACCGCGTGCTCGGGGGTGGCCTCGTGCCCGGCTCCCTGGTGCTTATCGGTGGCGAGCCGGGCAT
TGGCAAAAGCACGCTTATGCTCCAGATTGCCATGAGCTTACGGCAGCTCAAGGTGCTGTATATCTCGGGGGAGGAAAGTG
AGCAGCAAATCAAGATGCGGGCGGAGCGCCTCGGCGACCAGCATCCCGGCTGCTACATCCTCACCGAAACCAATACTCAA
AATATCTTCCGCCAAATCGACCAGCTACAGCCCAATGTGGTGGTAGTCGATTCTATCCAGACCCTGCAATCGGGCTTGGT
GGAGTCAGGAGCCGGCTCGGTGTCGCAAGTGCGGGAGTGCACCGCCGAACTGCTTAAGTACGCCAAGGAAACCGGCGTGC
CCGTACTGCTCATTGGCCATATCACCAAAGACGGTTCCATTGCCGGCCCCAAGATTCTGGAGCATATGGTCGATACCGTG
TTGCAGTTCGAAGGCGACCGGCATCTGAGCTACCGGATTCTGCGCACCATCAAAAATCGGTTTGGGTCTACTTCTGAGCT
GGGTATTTATGAGATGCAGGGCGCTGGTTTGCGCCAGGTATCCAACCCTTCGGAAATTCTGCTTAGCCAGCGCACCGAAA
CACTCAGTGGCATTGCCATCGGGGCTACACTGGAGGGGAACCGGCCCTTGCTAGTGGAAGTGCAGGCCCTGGTGAGCCCC
GCTACGTATGGCACGCCCCAGCGCAGTAGTACCGGCTTCGACTCCAAGCGGCTACAGATGCTGCTGGCCGTACTCGAAAA
GCGGAGCGGCCTCCGCCTGGGGCAGCACGACGTGTTTCTAAACATTGCCGGTGGGTTGCGTTTAGAAGACCCAGCCCTCG
ATCTGGCCGTGTGCGCTGCTGTCGTTTCTTCCCTCAATGACATACCGCTCAGCGGCGAAACCTGCTTGGCGGCTGAGGTA
GGATTGAGCGGCGAAATACGTGCCGTCAGCCGTCTCGATCAGCGTTTGTCGGAGTCCGAAAAACTCGGCTTTCAGGAAAT
GTACATTTCGCAGTTTAATGCTCGAGGTTTGGACTTAGGGCGCTTTGGTATTCGGGTACACCCGGTTGGGAGGCTAGATG
AAGTATTAACGGGACTGTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)

AAA domain (AAA_25)

(73-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.62

100

0.518
  radA Streptococcus pneumoniae Rx1

49.351

100

0.495
  radA Streptococcus pneumoniae D39

49.351

100

0.495
  radA Streptococcus pneumoniae R6

49.351

100

0.495
  radA Streptococcus pneumoniae TIGR4

49.351

100

0.495
  radA Streptococcus mitis NCTC 12261

49.134

100

0.492
  radA Streptococcus mitis SK321

49.134

100

0.492

Multiple sequence alignment