Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | DDF84_RS06900 | Genome accession | NZ_CP037900 |
| Coordinates | 1460241..1461608 (+) | Length | 455 a.a. |
| NCBI ID | WP_008649103.1 | Uniprot ID | A0A132HM32 |
| Organism | Cupriavidus metallidurans strain BS1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1455241..1466608
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDF84_RS06885 (DDF84_006885) | - | 1456195..1457304 (+) | 1110 | WP_024570879.1 | DUF1853 family protein | - |
| DDF84_RS06890 (DDF84_006890) | lplT | 1457355..1458674 (-) | 1320 | WP_024570878.1 | lysophospholipid transporter LplT | - |
| DDF84_RS06895 (DDF84_006895) | alr | 1459134..1460240 (+) | 1107 | WP_024570877.1 | alanine racemase | - |
| DDF84_RS06900 (DDF84_006900) | radA | 1460241..1461608 (+) | 1368 | WP_008649103.1 | DNA repair protein RadA | Machinery gene |
| DDF84_RS06905 (DDF84_006905) | - | 1461682..1463778 (-) | 2097 | WP_024570876.1 | hypothetical protein | - |
| DDF84_RS06910 (DDF84_006910) | - | 1464085..1464570 (+) | 486 | WP_008649101.1 | disulfide bond formation protein B | - |
| DDF84_RS06915 (DDF84_006915) | - | 1464658..1466580 (-) | 1923 | WP_024570875.1 | ATP-binding cassette domain-containing protein | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 48476.76 Da Isoelectric Point: 7.2043
>NTDB_id=350559 DDF84_RS06900 WP_008649103.1 1460241..1461608(+) (radA) [Cupriavidus metallidurans strain BS1]
MAKTKTVYTCTECGGTTPRWAGQCPQCNAWNTLVETVADSGSSAARRFQPLATSAVVRKLSEIEAADVPRFSTGIDEFDR
VLGGGLVAGGVVLIGGDPGIGKSTLLLQTLANLSASRRVLYVSGEESAAQIALRAHRLGVEAATLGLLPEIQLEKIQATL
EADKPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKSTGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEEQVAGSCVLVTQEGTRPLLVEVQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTMAVIPKANAPKQRIDGLEVIAVDRLEQAIDRVRHLD
MAKTKTVYTCTECGGTTPRWAGQCPQCNAWNTLVETVADSGSSAARRFQPLATSAVVRKLSEIEAADVPRFSTGIDEFDR
VLGGGLVAGGVVLIGGDPGIGKSTLLLQTLANLSASRRVLYVSGEESAAQIALRAHRLGVEAATLGLLPEIQLEKIQATL
EADKPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKSTGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEEQVAGSCVLVTQEGTRPLLVEVQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTMAVIPKANAPKQRIDGLEVIAVDRLEQAIDRVRHLD
Nucleotide
Download Length: 1368 bp
>NTDB_id=350559 DDF84_RS06900 WP_008649103.1 1460241..1461608(+) (radA) [Cupriavidus metallidurans strain BS1]
ATGGCCAAGACCAAGACGGTATACACATGCACCGAGTGCGGTGGCACCACGCCGCGATGGGCGGGCCAGTGCCCACAGTG
CAACGCCTGGAACACGCTGGTGGAAACGGTCGCGGATTCGGGGTCGTCCGCGGCACGCCGTTTCCAGCCGCTGGCGACGT
CCGCTGTGGTGCGCAAGCTGTCGGAGATCGAGGCGGCCGATGTGCCACGCTTCTCGACCGGTATCGACGAATTCGACCGC
GTGCTTGGCGGCGGCCTGGTGGCGGGTGGGGTGGTGCTGATCGGCGGGGACCCCGGCATCGGTAAATCGACCCTGCTGCT
GCAGACGCTGGCCAACCTGTCGGCCAGCCGGCGCGTGCTCTATGTGAGCGGCGAGGAATCCGCCGCCCAGATCGCGCTGC
GCGCCCATCGCCTGGGCGTGGAGGCCGCCACGCTCGGCCTGCTGCCCGAGATTCAGTTGGAGAAGATCCAGGCCACGCTC
GAGGCCGACAAGCCCGAGGTGGCCGTGATCGACTCGATCCAGACGGTTTACTCGGAGGCGCTGACGTCCGCGCCGGGCTC
CGTGGCCCAGGTACGCGAATGCGCGGCGCAACTGACGCGGATCGCCAAGAGTACCGGCATCACGATCATCCTGGTCGGCC
ACGTGACCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTCGAACACATCGTGGACACGGTGCTGTACTTCGAGGGGGAC
ACCCATTCCTCGCACCGCTTGATCCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGTGTATTCGCGATGAC
CGAGCGCGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTTCTTTCCCAGCATGAGGAGCAGGTGGCCGGTTCCTGTG
TGCTGGTGACCCAGGAGGGCACGCGGCCATTGCTGGTCGAAGTGCAGGCGCTGGTCGACACCGCCAACGTGCCGAATCCG
CGCCGGCTGGCCGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCCGTGCTGCATCGTCACGCGGGCATCGCGTG
CTTCGACCAGGACGTCTTCCTGAACGCGGTGGGAGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCCGTGCTGCTGT
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCTCGCGGCCTGGTGGTGTTCGGCGAGGTGGGCCTGGCGGGAGAAATC
CGCCCGAGCCCGCGCGGACAGGAGCGGCTCAAGGAAGCCGCCAAGCTTGGCTTCACGATGGCGGTGATCCCAAAGGCCAA
CGCGCCCAAGCAGCGGATCGATGGACTGGAGGTCATCGCGGTGGACCGGCTGGAACAGGCCATCGACCGGGTCAGGCATC
TGGACTGA
ATGGCCAAGACCAAGACGGTATACACATGCACCGAGTGCGGTGGCACCACGCCGCGATGGGCGGGCCAGTGCCCACAGTG
CAACGCCTGGAACACGCTGGTGGAAACGGTCGCGGATTCGGGGTCGTCCGCGGCACGCCGTTTCCAGCCGCTGGCGACGT
CCGCTGTGGTGCGCAAGCTGTCGGAGATCGAGGCGGCCGATGTGCCACGCTTCTCGACCGGTATCGACGAATTCGACCGC
GTGCTTGGCGGCGGCCTGGTGGCGGGTGGGGTGGTGCTGATCGGCGGGGACCCCGGCATCGGTAAATCGACCCTGCTGCT
GCAGACGCTGGCCAACCTGTCGGCCAGCCGGCGCGTGCTCTATGTGAGCGGCGAGGAATCCGCCGCCCAGATCGCGCTGC
GCGCCCATCGCCTGGGCGTGGAGGCCGCCACGCTCGGCCTGCTGCCCGAGATTCAGTTGGAGAAGATCCAGGCCACGCTC
GAGGCCGACAAGCCCGAGGTGGCCGTGATCGACTCGATCCAGACGGTTTACTCGGAGGCGCTGACGTCCGCGCCGGGCTC
CGTGGCCCAGGTACGCGAATGCGCGGCGCAACTGACGCGGATCGCCAAGAGTACCGGCATCACGATCATCCTGGTCGGCC
ACGTGACCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTCGAACACATCGTGGACACGGTGCTGTACTTCGAGGGGGAC
ACCCATTCCTCGCACCGCTTGATCCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGTGTATTCGCGATGAC
CGAGCGCGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTTCTTTCCCAGCATGAGGAGCAGGTGGCCGGTTCCTGTG
TGCTGGTGACCCAGGAGGGCACGCGGCCATTGCTGGTCGAAGTGCAGGCGCTGGTCGACACCGCCAACGTGCCGAATCCG
CGCCGGCTGGCCGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCCGTGCTGCATCGTCACGCGGGCATCGCGTG
CTTCGACCAGGACGTCTTCCTGAACGCGGTGGGAGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCCGTGCTGCTGT
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCTCGCGGCCTGGTGGTGTTCGGCGAGGTGGGCCTGGCGGGAGAAATC
CGCCCGAGCCCGCGCGGACAGGAGCGGCTCAAGGAAGCCGCCAAGCTTGGCTTCACGATGGCGGTGATCCCAAAGGCCAA
CGCGCCCAAGCAGCGGATCGATGGACTGGAGGTCATCGCGGTGGACCGGCTGGAACAGGCCATCGACCGGGTCAGGCATC
TGGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
50.985 |
100 |
0.512 |
| radA | Streptococcus mitis SK321 |
46.638 |
100 |
0.473 |
| radA | Streptococcus pneumoniae D39 |
46.537 |
100 |
0.473 |
| radA | Streptococcus pneumoniae TIGR4 |
46.537 |
100 |
0.473 |
| radA | Streptococcus pneumoniae R6 |
46.537 |
100 |
0.473 |
| radA | Streptococcus pneumoniae Rx1 |
46.537 |
100 |
0.473 |
| radA | Streptococcus mitis NCTC 12261 |
46.32 |
100 |
0.47 |