Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DDF84_RS01435 | Genome accession | NZ_CP037900 |
| Coordinates | 296640..297902 (-) | Length | 420 a.a. |
| NCBI ID | WP_024569515.1 | Uniprot ID | A0A132HGL0 |
| Organism | Cupriavidus metallidurans strain BS1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 291640..302902
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDF84_RS01410 (DDF84_001410) | ntrB | 291743..292612 (-) | 870 | WP_051385285.1 | nitrate ABC transporter permease | - |
| DDF84_RS01415 (DDF84_001415) | - | 292723..294027 (-) | 1305 | WP_017514458.1 | CmpA/NrtA family ABC transporter substrate-binding protein | - |
| DDF84_RS01420 (DDF84_001420) | - | 294405..295040 (-) | 636 | WP_024569516.1 | ANTAR domain-containing response regulator | - |
| DDF84_RS01425 (DDF84_001425) | - | 295215..295916 (+) | 702 | WP_017514460.1 | fumarylacetoacetate hydrolase family protein | - |
| DDF84_RS01430 (DDF84_001430) | maiA | 295921..296568 (+) | 648 | WP_011515169.1 | maleylacetoacetate isomerase | - |
| DDF84_RS01435 (DDF84_001435) | pilA | 296640..297902 (-) | 1263 | WP_024569515.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| DDF84_RS01440 (DDF84_001440) | - | 297963..299477 (+) | 1515 | WP_024569514.1 | M16 family metallopeptidase | - |
| DDF84_RS01445 (DDF84_001445) | - | 299486..300850 (+) | 1365 | WP_024569513.1 | M16 family metallopeptidase | - |
| DDF84_RS01450 (DDF84_001450) | rsmD | 300959..301591 (+) | 633 | WP_024569512.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| DDF84_RS01455 (DDF84_001455) | coaD | 301803..302288 (+) | 486 | WP_011515175.1 | pantetheine-phosphate adenylyltransferase | - |
| DDF84_RS01460 (DDF84_001460) | - | 302355..302615 (+) | 261 | WP_017511014.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 44141.24 Da Isoelectric Point: 6.9898
>NTDB_id=350553 DDF84_RS01435 WP_024569515.1 296640..297902(-) (pilA) [Cupriavidus metallidurans strain BS1]
MFSFWKKRKAEPAPESVEPPAAAPTPAPAPAPAPLPAPTPAAAPAVTPVAPPVAVPVATPVSTPASTPAPAPTPAPAPVH
VAPPVAPPVVPPVASAPPPASYTPPVIEELELTPPPAQTAEAKRGWMSRLRAGLSKTSRNIGVLFVGVKVDEALFEELET
ALLMADAGVEATEYLLGELRRRIKNDRIETAEGVKAALKDLLTQLLKPLEKTMELGREQPLVMMIAGVNGAGKTTSIGKL
CKHFQSYHQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESGDPAAVIFDAVNAARARKIDIVMADTAGRLPTQLHLM
EELKKVKRVIGKSMPTAPHEVLLVIDANTGQNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVG
EKVEDLQPFKADEFAEALLG
MFSFWKKRKAEPAPESVEPPAAAPTPAPAPAPAPLPAPTPAAAPAVTPVAPPVAVPVATPVSTPASTPAPAPTPAPAPVH
VAPPVAPPVVPPVASAPPPASYTPPVIEELELTPPPAQTAEAKRGWMSRLRAGLSKTSRNIGVLFVGVKVDEALFEELET
ALLMADAGVEATEYLLGELRRRIKNDRIETAEGVKAALKDLLTQLLKPLEKTMELGREQPLVMMIAGVNGAGKTTSIGKL
CKHFQSYHQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESGDPAAVIFDAVNAARARKIDIVMADTAGRLPTQLHLM
EELKKVKRVIGKSMPTAPHEVLLVIDANTGQNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVG
EKVEDLQPFKADEFAEALLG
Nucleotide
Download Length: 1263 bp
>NTDB_id=350553 DDF84_RS01435 WP_024569515.1 296640..297902(-) (pilA) [Cupriavidus metallidurans strain BS1]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCCGAACCGGCTCCCGAATCGGTCGAGCCGCCCGCGGCCGCCCCCACACCGGC
GCCTGCTCCTGCGCCGGCCCCGCTTCCCGCCCCCACCCCGGCTGCGGCACCTGCGGTAACCCCTGTCGCCCCCCCTGTAG
CGGTACCCGTTGCAACCCCGGTTTCGACCCCGGCTTCAACACCTGCGCCAGCTCCAACGCCCGCCCCGGCGCCCGTCCAT
GTGGCGCCACCCGTGGCGCCACCGGTCGTGCCGCCCGTGGCGTCGGCTCCGCCTCCGGCCAGCTACACGCCGCCGGTCAT
CGAGGAACTGGAGCTGACCCCGCCGCCCGCGCAAACCGCCGAAGCCAAGCGCGGCTGGATGTCGCGACTGCGTGCCGGCC
TGTCGAAGACCAGCCGCAACATCGGCGTGCTGTTCGTCGGCGTCAAGGTCGACGAGGCGCTGTTCGAGGAACTGGAAACG
GCGCTGCTGATGGCCGATGCCGGCGTGGAGGCCACCGAGTACCTGCTGGGCGAACTGCGCCGCCGCATCAAGAATGATCG
TATCGAAACGGCCGAAGGCGTGAAGGCCGCGCTCAAGGATCTGCTGACGCAACTGCTCAAGCCGCTCGAGAAGACGATGG
AACTGGGCCGCGAGCAGCCGCTGGTGATGATGATTGCCGGCGTCAACGGCGCGGGCAAGACCACCAGCATCGGTAAGCTT
TGCAAGCATTTCCAGTCCTATCACCAGTCCGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCCGCCGCGCGCGAACAACT
CACGATCTGGGGCGAGCGCAACAACGTGACCGTGGTGGCCCAGGAAAGCGGCGACCCAGCCGCCGTGATCTTCGATGCCG
TCAACGCGGCGCGCGCGCGCAAGATCGACATCGTGATGGCAGATACCGCTGGCCGCCTGCCCACGCAGCTTCACCTGATG
GAGGAACTCAAGAAGGTCAAGCGCGTGATCGGCAAGTCGATGCCGACCGCACCGCATGAAGTGCTGCTCGTGATCGACGC
CAATACCGGTCAGAACGCACTGGCCCAGACGCGCGCGTTCGATGACGCGCTCGGCCTGACCGGCCTGATCGTGACCAAGC
TCGACGGCACGGCCAAGGGCGGCATCCTGGCCGCGATCGCGCGCCAGCGTCCGGTACCGGTGTACTTTATCGGCGTGGGC
GAGAAGGTCGAGGACCTGCAGCCGTTCAAGGCGGACGAGTTCGCCGAGGCGCTGCTGGGCTGA
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCCGAACCGGCTCCCGAATCGGTCGAGCCGCCCGCGGCCGCCCCCACACCGGC
GCCTGCTCCTGCGCCGGCCCCGCTTCCCGCCCCCACCCCGGCTGCGGCACCTGCGGTAACCCCTGTCGCCCCCCCTGTAG
CGGTACCCGTTGCAACCCCGGTTTCGACCCCGGCTTCAACACCTGCGCCAGCTCCAACGCCCGCCCCGGCGCCCGTCCAT
GTGGCGCCACCCGTGGCGCCACCGGTCGTGCCGCCCGTGGCGTCGGCTCCGCCTCCGGCCAGCTACACGCCGCCGGTCAT
CGAGGAACTGGAGCTGACCCCGCCGCCCGCGCAAACCGCCGAAGCCAAGCGCGGCTGGATGTCGCGACTGCGTGCCGGCC
TGTCGAAGACCAGCCGCAACATCGGCGTGCTGTTCGTCGGCGTCAAGGTCGACGAGGCGCTGTTCGAGGAACTGGAAACG
GCGCTGCTGATGGCCGATGCCGGCGTGGAGGCCACCGAGTACCTGCTGGGCGAACTGCGCCGCCGCATCAAGAATGATCG
TATCGAAACGGCCGAAGGCGTGAAGGCCGCGCTCAAGGATCTGCTGACGCAACTGCTCAAGCCGCTCGAGAAGACGATGG
AACTGGGCCGCGAGCAGCCGCTGGTGATGATGATTGCCGGCGTCAACGGCGCGGGCAAGACCACCAGCATCGGTAAGCTT
TGCAAGCATTTCCAGTCCTATCACCAGTCCGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCCGCCGCGCGCGAACAACT
CACGATCTGGGGCGAGCGCAACAACGTGACCGTGGTGGCCCAGGAAAGCGGCGACCCAGCCGCCGTGATCTTCGATGCCG
TCAACGCGGCGCGCGCGCGCAAGATCGACATCGTGATGGCAGATACCGCTGGCCGCCTGCCCACGCAGCTTCACCTGATG
GAGGAACTCAAGAAGGTCAAGCGCGTGATCGGCAAGTCGATGCCGACCGCACCGCATGAAGTGCTGCTCGTGATCGACGC
CAATACCGGTCAGAACGCACTGGCCCAGACGCGCGCGTTCGATGACGCGCTCGGCCTGACCGGCCTGATCGTGACCAAGC
TCGACGGCACGGCCAAGGGCGGCATCCTGGCCGCGATCGCGCGCCAGCGTCCGGTACCGGTGTACTTTATCGGCGTGGGC
GAGAAGGTCGAGGACCTGCAGCCGTTCAAGGCGGACGAGTTCGCCGAGGCGCTGCTGGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
49.533 |
100 |
0.505 |