Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC58_RS15040 Genome accession   NZ_CP037894
Coordinates   2979434..2980039 (-) Length   201 a.a.
NCBI ID   WP_001648785.1    Uniprot ID   A0A3V9FJ62
Organism   Salmonella enterica strain FSW0104     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2974434..2985039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC58_RS15025 (EC58_15075) helD 2974651..2976705 (-) 2055 WP_023205591.1 DNA helicase IV -
  EC58_RS15030 (EC58_15080) - 2976829..2977275 (+) 447 WP_001261222.1 YccF domain-containing protein -
  EC58_RS15035 (EC58_15085) yccS 2977294..2979447 (+) 2154 WP_000950869.1 YccS family putative transporter -
  EC58_RS15040 (EC58_15090) sxy/tfoX 2979434..2980039 (-) 606 WP_001648785.1 TfoX/Sxy family DNA transformation protein Regulator
  EC58_RS15045 (EC58_15095) sulA 2980256..2980765 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  EC58_RS15050 (EC58_15100) ompA 2981122..2982174 (+) 1053 WP_001670727.1 porin OmpA -
  EC58_RS15055 (EC58_15105) matP 2982246..2982698 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  EC58_RS15060 (EC58_15110) - 2982884..2984644 (+) 1761 WP_023205590.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23188.97 Da        Isoelectric Point: 8.7403

>NTDB_id=350523 EC58_RS15040 WP_001648785.1 2979434..2980039(-) (sxy/tfoX) [Salmonella enterica strain FSW0104]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKILYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=350523 EC58_RS15040 WP_001648785.1 2979434..2980039(-) (sxy/tfoX) [Salmonella enterica strain FSW0104]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAATTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V9FJ62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756

Multiple sequence alignment