Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   FOB92_RS04540 Genome accession   NZ_CP046335
Coordinates   901784..902854 (-) Length   356 a.a.
NCBI ID   WP_000817852.1    Uniprot ID   -
Organism   Streptococcus mitis strain FDAARGOS_684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 896784..907854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB92_RS04525 (FOB92_04525) - 897869..898912 (+) 1044 WP_000752716.1 dihydrolipoamide acetyltransferase -
  FOB92_RS04530 (FOB92_04530) lpdA 898958..900661 (+) 1704 WP_001162878.1 dihydrolipoyl dehydrogenase -
  FOB92_RS04535 (FOB92_04535) - 900721..901710 (+) 990 WP_000873983.1 lipoate--protein ligase -
  FOB92_RS04540 (FOB92_04540) xerS 901784..902854 (-) 1071 WP_000817852.1 tyrosine recombinase XerS Machinery gene
  FOB92_RS04545 (FOB92_04545) - 903667..905217 (-) 1551 WP_004239419.1 ClC family H(+)/Cl(-) exchange transporter -
  FOB92_RS04550 (FOB92_04550) - 905234..906013 (-) 780 WP_000201106.1 ribonuclease HII -
  FOB92_RS04555 (FOB92_04555) ylqF 906000..906851 (-) 852 WP_000201321.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41273.31 Da        Isoelectric Point: 9.5220

>NTDB_id=350522 FOB92_RS04540 WP_000817852.1 901784..902854(-) (xerS) [Streptococcus mitis strain FDAARGOS_684]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESDISNADKMSDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=350522 FOB92_RS04540 WP_000817852.1 901784..902854(-) (xerS) [Streptococcus mitis strain FDAARGOS_684]
ATGAAACGTGAGATTTTACTGGAACGAATAGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTATCAATC
TAAGCTAGCTGTACCTTACAGTTTTACAACCTTGTACGAATATCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTAG
AGTCTGACATTTCAAATGCTGATAAAATGTCTGATATTCCTTTATCTGTCTTGGAAAATATGTCTAAGAAAGACATGGAA
TCTTTTATCCTTTATTTACGTGAACGTCCTTTGCTGAATGCTAATACAACCAAACAAGGAGTTTCACAGACAACTATCAA
TCGAACCTTGTCAGCTCTTTCCAGTCTTTATAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTTT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAAAAAAAGAAAGAAACGCTTGCTGCCAGAGCTGAAAACATCAAGCAAAAA
CTCTTTTTAGGTGATGAAACAGAAGGTTTCCTAACTTATATTGACCAAGAGTATCCACAACAACTTTCAAATCGCGCTCT
CTCATCATTCAACAAAAATAAAGAACGTGATTTGGCCATTATTGCCCTTCTATTGGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATCTGGATCTAAGAGATCTCAATCTCAAAATGATGGTTATTGATGTCACTCGAAAAGGGGGTAAACGTGACTCG
GTCAATGTCGCTGCCTTTGCTAAGCCTTATTTAGAGAATTATTTGGCCATTCGAAATCAACGCTATAAGACGGAAAAAAC
AGATACAGCCCTTTTTTTGACTCTCTACAGAGGAGTTCCTAATCGTATCGATGCTTCCAGCGTTGAGAAAATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACACCCCATAAACTACGACATACCCTAGCAACCAGGCTCTATGATGCCACT
AAATCGCAAGTTTTGGTCAGTCACCAGCTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATCGTTAATGA
TGAACAAAAGAATGCTCTAGACAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(67-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.876

100

0.989