Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEM42N_RS14360 Genome accession   NZ_CP037893
Coordinates   2913108..2913713 (-) Length   201 a.a.
NCBI ID   WP_001202373.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Montevideo str. 42N     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908108..2918713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEM42N_RS14345 (SEEM42N_14860) helD 2908325..2910379 (-) 2055 WP_000420522.1 DNA helicase IV -
  SEEM42N_RS14350 (SEEM42N_14865) - 2910503..2910949 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEEM42N_RS14355 (SEEM42N_14870) yccS 2910968..2913121 (+) 2154 WP_000950884.1 YccS family putative transporter -
  SEEM42N_RS14360 (SEEM42N_14875) sxy/tfoX 2913108..2913713 (-) 606 WP_001202373.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEM42N_RS14365 (SEEM42N_14880) sulA 2913930..2914439 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  SEEM42N_RS14370 (SEEM42N_14885) ompA 2914796..2915848 (+) 1053 WP_001562588.1 porin OmpA -
  SEEM42N_RS14375 (SEEM42N_14890) matP 2915920..2916372 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEM42N_RS14380 (SEEM42N_14895) - 2916558..2918318 (+) 1761 WP_000156462.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23125.87 Da        Isoelectric Point: 8.7524

>NTDB_id=350501 SEEM42N_RS14360 WP_001202373.1 2913108..2913713(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Montevideo str. 42N]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
NYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=350501 SEEM42N_RS14360 WP_001202373.1 2913108..2913713(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Montevideo str. 42N]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGTGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
AATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment