Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DAIF1_RS16260 Genome accession   NZ_CP037883
Coordinates   3540242..3540643 (-) Length   133 a.a.
NCBI ID   WP_005418455.1    Uniprot ID   -
Organism   Stenotrophomonas indicatrix strain DAIF1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3535242..3545643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAIF1_RS16245 (DAIF1_32170) - 3537253..3539289 (-) 2037 WP_059064855.1 methyl-accepting chemotaxis protein -
  DAIF1_RS16250 (DAIF1_32180) - 3539331..3539861 (-) 531 WP_025877750.1 chemotaxis protein CheW -
  DAIF1_RS16255 (DAIF1_32190) - 3539861..3540223 (-) 363 WP_025877749.1 response regulator -
  DAIF1_RS16260 (DAIF1_32200) pilG 3540242..3540643 (-) 402 WP_005418455.1 twitching motility response regulator PilG Regulator
  DAIF1_RS16265 (DAIF1_32210) gshB 3540884..3541831 (+) 948 WP_049466293.1 glutathione synthase -
  DAIF1_RS16270 (DAIF1_32220) - 3541831..3542715 (+) 885 WP_134832972.1 energy transducer TonB -
  DAIF1_RS16275 (DAIF1_32230) tsaB 3543247..3543960 (-) 714 WP_134832973.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14657.98 Da        Isoelectric Point: 6.3483

>NTDB_id=350432 DAIF1_RS16260 WP_005418455.1 3540242..3540643(-) (pilG) [Stenotrophomonas indicatrix strain DAIF1]
MTENTTAGGELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKATPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLGAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=350432 DAIF1_RS16260 WP_005418455.1 3540242..3540643(-) (pilG) [Stenotrophomonas indicatrix strain DAIF1]
ATGACTGAAAACACGACTGCGGGCGGGGAGCTCGCAGGACTCCGGGTGATGGTCATCGATGACTCGAAGACCATCCGCAG
GACTGCGGAAACACTGCTGAAGCGCGAAGGCTGCGAAGTAGTGACCGCGACGGACGGTTTCGAGGCCCTGGCCAAGATTG
CCGACCAGCAGCCGCAGATCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGCGCACTGATCAAG
GGTAACCAGCTGTTCAAGGCGACCCCGGTGATCATGCTGTCGTCCAAGGATGGTCTGTTCGACAAGGCGCGGGGGCGCAT
CGTCGGCTCGGAGCAATACCTGACCAAGCCATTCACGCGCGAAGAACTGCTGGGTGCCATCCGCACGTACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677

Multiple sequence alignment