Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   FOB91_RS06255 Genome accession   NZ_CP046328
Coordinates   1289886..1292429 (-) Length   847 a.a.
NCBI ID   WP_012131025.1    Uniprot ID   A8AZU4
Organism   Streptococcus gordonii strain FDAARGOS_683     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1284886..1297429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB91_RS06225 (FOB91_06225) ruvA 1284998..1285588 (-) 591 WP_012131019.1 Holliday junction branch migration protein RuvA Machinery gene
  FOB91_RS06230 (FOB91_06230) - 1285758..1286261 (+) 504 WP_012131020.1 helix-turn-helix domain-containing protein -
  FOB91_RS06235 (FOB91_06235) - 1286245..1286766 (+) 522 WP_012131021.1 RDD family protein -
  FOB91_RS06240 (FOB91_06240) hexB 1286802..1288745 (-) 1944 WP_012131022.1 DNA mismatch repair endonuclease MutL Machinery gene
  FOB91_RS06245 (FOB91_06245) - 1288930..1289370 (+) 441 WP_012131023.1 LytTR family DNA-binding domain-containing protein -
  FOB91_RS06250 (FOB91_06250) - 1289367..1289837 (+) 471 WP_012131024.1 DUF3021 domain-containing protein -
  FOB91_RS06255 (FOB91_06255) hexA 1289886..1292429 (-) 2544 WP_012131025.1 DNA mismatch repair protein MutS Machinery gene
  FOB91_RS06260 (FOB91_06260) argR 1292608..1293045 (-) 438 WP_008809983.1 arginine repressor -
  FOB91_RS06265 (FOB91_06265) argS 1293174..1294862 (+) 1689 WP_012131026.1 arginine--tRNA ligase -
  FOB91_RS06270 (FOB91_06270) - 1295091..1296026 (-) 936 WP_012131027.1 YitT family protein -

Sequence


Protein


Download         Length: 847 a.a.        Molecular weight: 95245.52 Da        Isoelectric Point: 4.7958

>NTDB_id=350421 FOB91_RS06255 WP_012131025.1 1289886..1292429(-) (hexA) [Streptococcus gordonii strain FDAARGOS_683]
MATEKISPGMQQYLDIKKDYQDAFLLFRMGDFYELFYEDAVNAAQILEIALTSRNKNSENPIPMAGVPYHSAQQYIDVLI
ESGYKVAIAEQMEDPKQAVGVVKREVVQVITPGTVVDSSKPVGENNFLVALDRQEQAYGLAYMDLATGEFQVTSLADFDQ
ACGEIRNLRAREVVVGYCLSEDEQQILSKQMNLLLSEVEEAMEDVQLLGDELSSLEKQTAGKLLAYVFQTQMRELSHLKK
VHHYEIKDFLQMDYATKTSLDLTENARTGKKHGSLFWLMDETKTAMGGRLLRSWIQHPLIDKGRIIKRQDVVQVFLDYFF
ERSDLADSLKGVYDIERLVSRVSFGKTNPKDLLQLASTLSHVPQIRSILETIESPALESLVARLDAIPELENLISSAIDP
DAPQVITEGNIIRTGFDETLDQYRLVMREGTSWIADIEAKEREASGITNLKIDYNKKDGYYFHVTNSQLGNVPSHFFRKA
TLKNSERFGTEELARIEGEMLEAREKSANLEYEIFMRIREEVGKYIQRLQALAQTLATVDVLQSFAVVAESQHLVRPSFT
SSRSLQIKKGRHAVVEKVMGAQSYIPNSIELDQETDIQLITGPNMSGKSTYMRQLAMIVIMAQMGSYVPAEVASLPIFDA
IFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEYIHDRTKAKTLFATHYHEL
TDLSSSLTRLENVHVATLEKDGQVTFLHKIEAGPADKSYGIHVAKIAGLPTDLLRRADAILTDLENQEKREASLPASRTD
SQKVSEQMSLFVEETENPVLTELRDLDIYNMTPLEVMAAVAELKKKL

Nucleotide


Download         Length: 2544 bp        

>NTDB_id=350421 FOB91_RS06255 WP_012131025.1 1289886..1292429(-) (hexA) [Streptococcus gordonii strain FDAARGOS_683]
ATGGCAACAGAAAAAATATCGCCAGGTATGCAGCAGTACTTGGATATTAAAAAAGACTATCAGGACGCCTTCCTGCTGTT
TCGTATGGGTGATTTCTATGAGTTGTTTTACGAGGATGCTGTTAATGCGGCACAGATTCTCGAGATTGCCCTGACTAGCC
GTAATAAGAATTCAGAAAATCCCATTCCAATGGCGGGTGTACCTTATCACTCTGCCCAGCAATATATTGATGTTTTGATT
GAGTCTGGTTATAAGGTTGCCATTGCAGAGCAGATGGAAGATCCTAAACAGGCCGTGGGAGTGGTCAAACGCGAGGTGGT
CCAGGTTATTACGCCGGGTACGGTAGTGGATTCTAGTAAGCCAGTCGGAGAAAATAACTTTTTGGTTGCTTTGGATAGGC
AGGAGCAAGCTTATGGCTTGGCCTATATGGATCTGGCTACGGGAGAATTTCAGGTAACCAGCCTGGCAGACTTTGACCAA
GCTTGTGGAGAAATTCGAAATCTCCGAGCTCGGGAAGTAGTCGTAGGTTATTGCTTGTCAGAAGATGAGCAGCAGATTTT
GTCAAAACAAATGAATTTACTCCTGTCAGAAGTCGAGGAAGCAATGGAGGACGTTCAGCTTTTAGGAGATGAGTTGTCAT
CTTTAGAAAAGCAGACGGCAGGGAAGCTTCTGGCCTATGTTTTTCAGACACAGATGCGGGAGCTCAGCCATCTCAAGAAG
GTCCATCATTATGAGATAAAAGATTTTCTGCAGATGGATTATGCGACAAAGACCAGCCTAGACTTGACTGAAAATGCCCG
TACAGGTAAGAAGCATGGTAGTCTTTTTTGGCTCATGGATGAAACAAAAACGGCCATGGGAGGACGCCTACTTCGTTCTT
GGATCCAGCATCCCTTGATTGATAAGGGACGAATTATCAAGCGTCAAGATGTTGTTCAGGTCTTTCTGGATTATTTCTTT
GAGCGGAGTGATTTGGCAGATAGTCTCAAGGGCGTCTATGATATTGAACGCCTGGTAAGTCGTGTGTCATTTGGCAAGAC
CAATCCCAAGGACCTTCTACAATTGGCTTCTACTTTAAGCCATGTTCCTCAGATCCGGTCAATTTTAGAAACGATTGAAA
GCCCAGCTCTGGAGAGTTTGGTGGCAAGGCTAGATGCGATTCCTGAGCTGGAAAATCTAATCAGCTCTGCGATTGACCCA
GATGCTCCACAAGTAATTACTGAGGGCAATATCATTCGAACTGGTTTTGACGAGACTTTGGACCAGTACCGTTTGGTCAT
GAGAGAGGGGACTAGCTGGATTGCGGACATTGAAGCCAAGGAGCGAGAGGCAAGTGGTATTACTAATCTGAAAATTGATT
ATAACAAGAAGGATGGCTACTATTTCCATGTAACCAATTCTCAACTCGGCAATGTCCCTAGCCATTTTTTCCGAAAAGCA
ACCTTGAAAAATTCTGAGCGTTTTGGTACGGAAGAGCTGGCGCGCATTGAAGGCGAGATGTTGGAGGCGCGTGAGAAGTC
TGCTAATCTGGAATATGAGATCTTCATGCGCATTCGTGAAGAGGTCGGAAAATATATTCAACGGCTACAAGCCTTAGCTC
AAACCCTAGCTACGGTCGATGTTTTACAGAGCTTTGCGGTTGTGGCTGAAAGTCAACACTTAGTCCGTCCAAGTTTTACA
AGCAGTCGTAGTTTGCAGATTAAAAAAGGCCGTCATGCGGTTGTCGAAAAAGTCATGGGAGCCCAAAGCTACATCCCAAA
TAGTATCGAACTGGATCAAGAAACAGATATTCAGCTGATTACTGGACCAAATATGAGCGGGAAGTCAACCTACATGCGAC
AGCTGGCAATGATTGTCATCATGGCTCAAATGGGATCGTATGTACCAGCAGAAGTAGCCAGTCTTCCGATTTTCGATGCT
ATCTTTACACGAATAGGTGCGGCAGATGATTTGGTGTCTGGTCAATCGACCTTTATGGTGGAGATGATGGAGGCCAATCG
GGCCATTCGACAAGCAAGTGAACGCTCTTTGATCCTTTTTGATGAACTGGGGCGGGGGACTGCGACTTATGATGGGATGG
CTCTGGCACAAGCAATTATTGAGTATATTCATGATCGTACCAAGGCCAAGACTCTTTTTGCAACCCATTATCATGAGTTG
ACAGACCTGTCAAGTAGCTTGACACGATTAGAAAACGTCCATGTGGCAACTCTAGAAAAAGATGGCCAAGTGACATTTTT
ACATAAGATTGAAGCAGGACCTGCTGACAAGTCCTATGGGATTCATGTTGCAAAAATTGCTGGCTTACCTACGGATTTGT
TAAGGCGAGCAGATGCGATTTTGACAGATTTGGAAAATCAAGAGAAAAGAGAGGCTTCTCTTCCAGCGTCTAGAACGGAC
TCCCAAAAAGTGTCTGAGCAGATGTCGCTTTTTGTAGAAGAAACGGAAAATCCAGTCCTGACTGAACTACGAGACTTGGA
CATCTACAATATGACTCCCCTGGAAGTCATGGCAGCCGTGGCCGAGCTCAAGAAGAAGTTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A8AZU4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

78.158

100

0.782

  mutS Pseudomonas stutzeri strain ATCC 17587

36.744

100

0.373