Detailed information NTG0350245

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GK046_RS07865
• Genome accession: NZ_CP046259
• Coordinates: 1619164..1620156 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECO2947
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1614164..1625156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GK046_RS07840 (GK046_07840)	ygbN	1614820..1616184 (+)	1365	WP_000104429.1	GntP family transporter	-
GK046_RS07845 (GK046_07845)	-	1616223..1616459 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GK046_RS07850 (GK046_07850)	-	1616470..1617896 (-)	1427	Protein_1545	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GK046_RS07855 (GK046_07855)	-	1617896..1618489 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GK046_RS07860 (GK046_07860)	-	1618636..1619043 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
GK046_RS07865 (GK046_07865)	rpoS	1619164..1620156 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GK046_RS07870 (GK046_07870)	nlpD	1620219..1621313 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GK046_RS07875 (GK046_07875)	pcm	1621498..1622124 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GK046_RS07880 (GK046_07880)	surE	1622118..1622879 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GK046_RS07885 (GK046_07885)	truD	1622860..1623909 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GK046_RS07890 (GK046_07890)	ispF	1623906..1624385 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GK046_RS07895 (GK046_07895)	ispD	1624385..1625095 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=350245 GK046_RS07865 WP_000081550.1 1619164..1620156(-) (rpoS) [Escherichia coli strain ECO2947]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=350245 GK046_RS07865 WP_000081550.1 1619164..1620156(-) (rpoS) [Escherichia coli strain ECO2947]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715