Detailed information NTG0350176

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: E1H28_RS04020
• Genome accession: NZ_CP037840
• Coordinates: 794972..795679 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain Cd5
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 789972..800679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1H28_RS03995 (E1H28_04085)	cdd1	790767..791012 (+)	246	WP_009888450.1	protein Cdd1	-
E1H28_RS04000 (E1H28_04090)	-	791230..791499 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
E1H28_RS04005 (E1H28_04100)	-	792377..793114 (-)	738	WP_003439186.1	ABC transporter permease	-
E1H28_RS04010 (E1H28_04105)	-	793126..793887 (-)	762	WP_003439185.1	ABC transporter permease	-
E1H28_RS04015 (E1H28_04110)	-	793887..794810 (-)	924	WP_025985748.1	ABC transporter ATP-binding protein	-
E1H28_RS04020 (E1H28_04115)	scnR	794972..795679 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
E1H28_RS04025 (E1H28_04120)	-	795724..797130 (+)	1407	WP_021358930.1	sensor histidine kinase	-
E1H28_RS04030 (E1H28_04125)	-	798841..799230 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
E1H28_RS04035 (E1H28_04130)	-	800100..800570 (+)	471	WP_003439176.1	VOC family protein	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=350176 E1H28_RS04020 WP_009888460.1 794972..795679(+) (scnR) [Clostridioides difficile strain Cd5]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=350176 E1H28_RS04020 WP_009888460.1 794972..795679(+) (scnR) [Clostridioides difficile strain Cd5]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGGTTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379