Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GKC13_RS03340 Genome accession   NZ_CP046134
Coordinates   633944..634624 (+) Length   226 a.a.
NCBI ID   WP_011681349.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 628944..639624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS03325 (GKC13_03345) - 630167..631516 (-) 1350 WP_014621757.1 MATE family efflux transporter -
  GKC13_RS03330 (GKC13_03350) - 631644..632913 (-) 1270 Protein_650 nucleobase:cation symporter-2 family protein -
  GKC13_RS03335 (GKC13_03355) - 632913..633493 (-) 581 Protein_651 xanthine phosphoribosyltransferase -
  GKC13_RS03340 (GKC13_03360) braR 633944..634624 (+) 681 WP_011681349.1 response regulator transcription factor Regulator
  GKC13_RS03345 (GKC13_03365) - 634614..635588 (+) 975 WP_024009971.1 sensor histidine kinase -
  GKC13_RS03350 (GKC13_03370) - 635733..636491 (+) 759 WP_014608483.1 ABC transporter ATP-binding protein -
  GKC13_RS03355 (GKC13_03375) - 636493..638493 (+) 2001 WP_179970644.1 ABC transporter permease -
  GKC13_RS03360 (GKC13_03380) - 638578..639072 (+) 495 WP_002885314.1 YkgJ family cysteine cluster protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26206.51 Da        Isoelectric Point: 4.8038

>NTDB_id=350165 GKC13_RS03340 WP_011681349.1 633944..634624(+) (braR) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MHKILLVEDDEVIRQQVKKILEQWEYEVVLVEDFMEVLSLFVKEEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=350165 GKC13_RS03340 WP_011681349.1 633944..634624(+) (braR) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAGAAAATACTAGAACAGTGGGAGTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTCTTTTTGTAAAAGAAGAACCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTCAACGGTTATCACTGGTGTCAGGAAATTCGGAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTTGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

51.835

96.46

0.5