Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GKC13_RS01590 Genome accession   NZ_CP046134
Coordinates   292695..293426 (+) Length   243 a.a.
NCBI ID   WP_084829848.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 287695..298426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS01585 (GKC13_01575) - 291690..292421 (-) 732 WP_084829849.1 DUF554 domain-containing protein -
  GKC13_RS01590 (GKC13_01580) pptA 292695..293426 (+) 732 WP_084829848.1 ABC transporter ATP-binding protein Regulator
  GKC13_RS01595 (GKC13_01585) - 293429..295018 (+) 1590 WP_084829847.1 ABC transporter permease -
  GKC13_RS01600 (GKC13_01590) proB 295139..295942 (+) 804 WP_002948808.1 glutamate 5-kinase -
  GKC13_RS01605 (GKC13_01595) - 295944..297194 (+) 1251 WP_084829846.1 glutamate-5-semialdehyde dehydrogenase -
  GKC13_RS01610 (GKC13_01600) - 297528..297818 (+) 291 WP_014621939.1 hypothetical protein -
  GKC13_RS01615 (GKC13_01605) - 298038..298394 (+) 357 Protein_309 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27605.46 Da        Isoelectric Point: 4.7304

>NTDB_id=350143 GKC13_RS01590 WP_084829848.1 292695..293426(+) (pptA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MIRFEHVTKRYENKDALSDLNLEIRDGEILGLISHNGAGKTTTISILTSIIEASYGEVYVDDMALSQHRDAIKKKIAYVP
DSPDLFLNLTANDYWYFLTRIYDLEASQVEERLTDLMSTFDLTENCYNLISSFSHGMRQKVVVIDALLVNPQIWILDEPL
TGLDPQASYDLKEAMRNHAKEGNSVLFSTHVLSVAEQICDRIGILKKGKLIFQGSIAELKHQYPDKDLETIYLEMAGRKA
EEV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=350143 GKC13_RS01590 WP_084829848.1 292695..293426(+) (pptA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGATTCGTTTTGAACATGTAACGAAACGTTATGAAAATAAGGATGCTCTCTCAGATCTTAATCTCGAGATTCGAGACGG
TGAAATCCTTGGTTTGATTAGTCACAATGGAGCTGGTAAAACTACGACCATTTCCATTTTGACGTCTATTATTGAAGCTA
GTTATGGAGAGGTTTACGTCGATGATATGGCCCTCAGTCAGCATCGTGATGCTATTAAGAAGAAAATAGCATATGTGCCA
GATTCACCGGACTTATTTCTAAATTTGACTGCCAATGATTACTGGTACTTTTTGACACGTATCTATGATTTGGAAGCTAG
TCAGGTTGAGGAACGTTTGACTGATCTCATGTCTACCTTTGACTTGACTGAGAATTGCTATAATCTCATTTCATCCTTCT
CTCATGGTATGCGTCAGAAGGTTGTTGTTATCGATGCTCTTCTGGTTAATCCACAGATTTGGATTTTAGATGAGCCTTTG
ACTGGTCTGGACCCACAGGCATCTTATGATTTGAAAGAAGCTATGCGTAACCATGCTAAGGAGGGTAATAGTGTGCTCTT
CTCAACCCACGTTTTAAGTGTAGCTGAACAGATCTGTGATCGCATCGGTATTTTGAAGAAAGGAAAACTCATCTTCCAAG
GGTCTATAGCTGAACTTAAGCATCAGTACCCTGACAAGGATTTGGAAACCATTTATCTAGAAATGGCTGGACGTAAGGCC
GAGGAGGTGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

37.553

97.531

0.366