Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GJV39_RS08205 Genome accession   NZ_CP046114
Coordinates   1618689..1620518 (+) Length   609 a.a.
NCBI ID   WP_021110415.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613689..1625518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS08175 (GJV39_08175) - 1614568..1615233 (+) 666 WP_021110411.1 tetratricopeptide repeat protein -
  GJV39_RS08180 (GJV39_08180) - 1615235..1615882 (+) 648 WP_021110412.1 tetratricopeptide repeat protein -
  GJV39_RS08185 (GJV39_08185) - 1615884..1616468 (+) 585 WP_021110413.1 hypothetical protein -
  GJV39_RS08190 (GJV39_08190) - 1616453..1617475 (+) 1023 WP_021110414.1 sel1 repeat family protein -
  GJV39_RS08195 (GJV39_08195) dinR/lexA 1617669..1618298 (+) 630 WP_012621497.1 transcriptional repressor LexA Regulator
  GJV39_RS08200 (GJV39_08200) cyaY 1618381..1618689 (+) 309 WP_020996917.1 iron donor protein CyaY -
  GJV39_RS08205 (GJV39_08205) recQ 1618689..1620518 (+) 1830 WP_021110415.1 ATP-dependent DNA helicase RecQ Machinery gene
  GJV39_RS08210 (GJV39_08210) ligA 1620576..1622603 (-) 2028 WP_021110416.1 NAD-dependent DNA ligase LigA -
  GJV39_RS08215 (GJV39_08215) zipA 1622667..1623485 (-) 819 WP_016528235.1 cell division protein ZipA -
  GJV39_RS08220 (GJV39_08220) cysZ 1623595..1624350 (+) 756 WP_021110417.1 sulfate transporter CysZ -
  GJV39_RS08230 (GJV39_08230) frdD 1624669..1625013 (-) 345 WP_005712720.1 fumarate reductase subunit FrdD -
  GJV39_RS08235 (GJV39_08235) frdC 1625027..1625419 (-) 393 WP_021110418.1 fumarate reductase subunit FrdC -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69046.17 Da        Isoelectric Point: 7.5134

>NTDB_id=350093 GJV39_RS08205 WP_021110415.1 1618689..1620518(+) (recQ) [Glaesserella parasuis strain SCW0912]
MSVTPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSHRFSVMGYHAGMTVQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATTYVQKQQTSKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIACD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=350093 GJV39_RS08205 WP_021110415.1 1618689..1620518(+) (recQ) [Glaesserella parasuis strain SCW0912]
ATGTCAGTTACACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGCAAAGATTGCTTGGTGATTATGACGACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTAATTTCGCTAATGAAGGATCAGGTAGATCAA
CTGCTCACCAATGGTGTTGAAGCAGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCGGGACAACTCAAGCTACTTTACCTTTCACCCGAAAAGGTAATGACATCAAATTTTTTTCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCAGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCACTGACTGCAACTGCCGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGTTAGAAGATCCCCACACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAACTGATCAAATTTATCAGCAGTCAGCAAGGGAAAAGTGGTATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCACCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GGTACAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGAATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGGCGAGCAGGGCGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGTTGGCTACACAAGGT
ATTATTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCTCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCGACAACTTATGTGCAGAAACAGCAAACTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATCCCTCCTTATGTGGTTTTCAATGACGCTACCCTA
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGGCTTATTAGAGAGCATTTATATCATATAGAAAGTATTGCTTGTGATTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

HRDC domain (HRDC)

(530-596)

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

DEAD/DEAH box helicase (DEAD)

(25-181)

RQC domain (RQC)

(402-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.696

97.209

0.386