Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GJV39_RS07940 Genome accession   NZ_CP046114
Coordinates   1564495..1565004 (+) Length   169 a.a.
NCBI ID   WP_021109343.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559495..1570004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS07925 (GJV39_07925) - 1561336..1561680 (+) 345 WP_005711402.1 DUF5339 domain-containing protein -
  GJV39_RS07930 (GJV39_07930) - 1562072..1562335 (-) 264 WP_012621534.1 GrxA family glutaredoxin -
  GJV39_RS07935 (GJV39_07935) typA 1562384..1564231 (-) 1848 WP_021109344.1 translational GTPase TypA -
  GJV39_RS07940 (GJV39_07940) luxS 1564495..1565004 (+) 510 WP_021109343.1 S-ribosylhomocysteine lyase Regulator
  GJV39_RS07945 (GJV39_07945) - 1565120..1565299 (+) 180 WP_021109342.1 hypothetical protein -
  GJV39_RS07950 (GJV39_07950) - 1565298..1565726 (+) 429 Protein_1569 ATP-binding cassette domain-containing protein -
  GJV39_RS07955 (GJV39_07955) iscX 1565811..1566005 (-) 195 WP_005711410.1 Fe-S cluster assembly protein IscX -
  GJV39_RS07960 (GJV39_07960) fdx 1566005..1566346 (-) 342 WP_010785894.1 ISC system 2Fe-2S type ferredoxin -
  GJV39_RS07965 (GJV39_07965) hscA 1566441..1568297 (-) 1857 WP_021109340.1 Fe-S protein assembly chaperone HscA -
  GJV39_RS07970 (GJV39_07970) - 1568414..1569049 (-) 636 WP_005714646.1 DUF2625 family protein -
  GJV39_RS07975 (GJV39_07975) hscB 1569170..1569691 (-) 522 WP_021109339.1 Fe-S protein assembly co-chaperone HscB -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18962.78 Da        Isoelectric Point: 5.9302

>NTDB_id=350090 GJV39_RS07940 WP_021109343.1 1564495..1565004(+) (luxS) [Glaesserella parasuis strain SCW0912]
MPLLDSFKVDHTRMSAPAVRVAKTMTTPKGDTITVFDLRFVRPNIEILSPRGIHTMEHLFAGFMRDHLNSDTVEIIDISP
MGCRTGFYMSLIGSPSAEEVAKAWEASMRDALEKVPDETKIPELNEFQCGSYKEHSLADAHEIARNVLKQPIGINRNKDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=350090 GJV39_RS07940 WP_021109343.1 1564495..1565004(+) (luxS) [Glaesserella parasuis strain SCW0912]
ATGCCTTTACTAGATAGCTTTAAAGTGGATCACACTCGTATGAGCGCTCCTGCGGTGCGTGTTGCAAAAACAATGACAAC
CCCGAAGGGAGATACGATTACTGTGTTTGATTTGCGTTTTGTCCGTCCAAACATTGAAATTTTATCTCCACGTGGTATTC
ATACGATGGAACATTTATTTGCTGGTTTTATGCGTGATCATCTCAATAGCGATACCGTTGAAATTATTGATATTTCCCCG
ATGGGTTGCCGTACGGGATTTTATATGTCGTTAATTGGTTCACCTTCAGCTGAAGAAGTGGCAAAAGCTTGGGAAGCCTC
TATGCGTGATGCGTTAGAGAAAGTGCCTGATGAAACTAAAATTCCTGAGTTAAATGAGTTTCAATGTGGTTCATATAAGG
AACATTCTCTTGCTGATGCACACGAAATTGCGCGTAATGTGTTAAAACAACCGATTGGTATTAACCGTAACAAAGATTTA
GCATTAGATGAGAAATTGCTAAATCCATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

69.643

99.408

0.692

Multiple sequence alignment