Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GJV39_RS02455 Genome accession   NZ_CP046114
Coordinates   483483..484088 (-) Length   201 a.a.
NCBI ID   WP_015939588.1    Uniprot ID   B8F5Q8
Organism   Glaesserella parasuis strain SCW0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 478483..489088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS02440 (GJV39_02440) rpiA 479669..480328 (+) 660 WP_005712062.1 ribose-5-phosphate isomerase RpiA -
  GJV39_RS02445 (GJV39_02445) serA 480390..481622 (+) 1233 WP_021109814.1 phosphoglycerate dehydrogenase -
  GJV39_RS02450 (GJV39_02450) pyrG 481738..483372 (-) 1635 WP_021109813.1 glutamine hydrolyzing CTP synthase -
  GJV39_RS02455 (GJV39_02455) recR 483483..484088 (-) 606 WP_015939588.1 recombination mediator RecR Machinery gene
  GJV39_RS02460 (GJV39_02460) - 484155..484484 (-) 330 WP_015939587.1 YbaB/EbfC family nucleoid-associated protein -
  GJV39_RS02465 (GJV39_02465) - 484647..485309 (+) 663 WP_005712071.1 pseudouridine synthase -
  GJV39_RS02470 (GJV39_02470) galE 485374..486390 (+) 1017 WP_021109812.1 UDP-glucose 4-epimerase GalE -
  GJV39_RS02475 (GJV39_02475) - 486393..487664 (+) 1272 WP_015939585.1 AmpG family muropeptide MFS transporter -
  GJV39_RS02480 (GJV39_02480) tal 487779..488729 (+) 951 WP_021109811.1 transaldolase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.33 Da        Isoelectric Point: 5.8690

>NTDB_id=350071 GJV39_RS02455 WP_015939588.1 483483..484088(-) (recR) [Glaesserella parasuis strain SCW0912]
MQSSPLLENLMEALRVLPGVGPKSAQRMAYHLLQRNRSGGVNLAKALSEAMTHIGHCKSCRTFTEEDECAICQNYRRQIS
GQLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLEEESFQEVILATNPTIEGDATANYIAEM
CSIHNIKVTRIAHGIPVGSELEMVDGTSLSHSFVGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=350071 GJV39_RS02455 WP_015939588.1 483483..484088(-) (recR) [Glaesserella parasuis strain SCW0912]
ATGCAAAGTAGCCCTTTACTTGAAAATCTTATGGAAGCCCTGCGTGTATTGCCAGGGGTCGGTCCAAAATCTGCACAACG
TATGGCGTATCATCTTTTACAGCGTAACCGCTCAGGCGGTGTGAATTTAGCTAAAGCATTGAGCGAAGCAATGACTCACA
TTGGACATTGCAAATCTTGCCGAACTTTTACTGAAGAAGATGAGTGTGCTATCTGCCAAAACTACCGCCGCCAAATCAGC
GGACAACTTTGTGTGGTTGAAATGCCTGCAGATATTCAAGCGATTGAACAAACTGGGCAATTTTCAGGGCGTTATTTTGT
ATTAATGGGACATCTATCTCCTTTAGATGGAATAGGACCTCGCGAAATTGGTTTAGATTTATTACAAAAACGCTTAGAAG
AAGAATCTTTTCAAGAAGTGATTCTGGCAACCAATCCAACGATTGAGGGGGATGCGACCGCAAATTATATCGCTGAGATG
TGTTCTATTCACAATATTAAAGTTACTCGTATCGCGCACGGTATTCCTGTCGGAAGTGAATTAGAAATGGTTGACGGAAC
AAGCCTTTCTCATTCATTTGTCGGAAGACGGGATATTTCTTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F5Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.5

99.502

0.403