Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GJV39_RS00535 Genome accession   NZ_CP046114
Coordinates   126416..127795 (-) Length   459 a.a.
NCBI ID   WP_021110245.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121416..132795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS12055 - 122572..122748 (-) 177 Protein_96 helix-turn-helix domain-containing protein -
  GJV39_RS00515 (GJV39_00515) - 122907..123461 (+) 555 Protein_97 transposase -
  GJV39_RS12555 - 123912..124043 (+) 132 WP_391489102.1 hypothetical protein -
  GJV39_RS00520 (GJV39_00520) - 124070..124678 (+) 609 Protein_99 IS256 family transposase -
  GJV39_RS00525 (GJV39_00525) ftsX 124827..125753 (-) 927 WP_021110247.1 permease-like cell division protein FtsX -
  GJV39_RS00530 (GJV39_00530) ftsE 125763..126416 (-) 654 WP_021110246.1 cell division ATP-binding protein FtsE -
  GJV39_RS00535 (GJV39_00535) pilA 126416..127795 (-) 1380 WP_021110245.1 signal recognition particle-docking protein FtsY Machinery gene
  GJV39_RS00540 (GJV39_00540) rsmD 127894..128481 (+) 588 WP_020457627.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GJV39_RS00545 (GJV39_00545) - 128668..128916 (-) 249 WP_020457626.1 DSBA oxidoreductase -
  GJV39_RS00550 (GJV39_00550) - 128916..129359 (-) 444 WP_020457625.1 nuclear transport factor 2 family protein -
  GJV39_RS00555 (GJV39_00555) - 129494..129610 (+) 117 Protein_106 helix-turn-helix domain-containing protein -
  GJV39_RS00560 (GJV39_00560) rhuM 129691..130264 (-) 574 Protein_107 RhuM family protein -
  GJV39_RS00565 (GJV39_00565) - 130451..130810 (-) 360 WP_010787368.1 hypothetical protein -
  GJV39_RS00570 (GJV39_00570) - 130854..131225 (+) 372 WP_020457622.1 LysR substrate-binding domain-containing protein -
  GJV39_RS00575 (GJV39_00575) - 131249..132010 (+) 762 WP_021110131.1 hypothetical protein -
  GJV39_RS00580 (GJV39_00580) - 132044..132622 (+) 579 WP_021110130.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50535.93 Da        Isoelectric Point: 4.2040

>NTDB_id=350066 GJV39_RS00535 WP_021110245.1 126416..127795(-) (pilA) [Glaesserella parasuis strain SCW0912]
MSDEKKKKGFWSWLGFGKKEGVEQTATTEEKVAEKADAQPEEITEQAVSSEQDFAKNEEIIEENITTEDVVEVPTEVVEE
VIVEPTAEETIETPAETVEQAVVEPTAEITESLDEQAEELQISEQNPPLVEDESPVEERVQADEYQEKPTSEGGFFSRLI
KGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTEHATKQQLRDAELLYQQLKVELADVLK
PVAQSLVLEDKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGADS
ASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGL
TGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEFIEALFTHEDEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=350066 GJV39_RS00535 WP_021110245.1 126416..127795(-) (pilA) [Glaesserella parasuis strain SCW0912]
ATGTCAGATGAAAAGAAGAAAAAAGGCTTTTGGTCTTGGTTAGGTTTCGGGAAAAAGGAAGGCGTTGAACAAACGGCAAC
AACCGAAGAAAAAGTAGCAGAGAAAGCAGATGCTCAACCAGAAGAAATTACGGAACAAGCGGTCAGTTCTGAGCAAGATT
TTGCAAAAAATGAAGAGATTATTGAAGAAAATATAACGACCGAAGACGTGGTTGAAGTACCAACTGAAGTTGTCGAAGAA
GTGATTGTTGAACCAACGGCAGAAGAAACGATTGAAACACCAGCTGAAACTGTTGAGCAGGCAGTTGTTGAACCCACAGC
AGAAATCACGGAGAGCTTAGATGAACAAGCGGAAGAGTTGCAAATTTCTGAGCAAAATCCACCGCTTGTCGAAGATGAAA
GTCCAGTCGAAGAACGTGTTCAGGCAGATGAATATCAAGAAAAACCAACCAGCGAAGGCGGTTTTTTCAGCCGTTTAATC
AAAGGATTAATCAAAACGAAGCAGAGTATCGGCTCTGGCTTCCGTAATTTCTTTAGTGGTAAGAAAATTGATGATGAGTT
GTTTGAAGAGCTAGAAGAACAGTTATTGGTGGCGGATTTAGGTATGCCGACTACCACGAAAATCATTAAAAATTTAACCG
AACACGCCACAAAACAGCAATTACGTGACGCTGAGTTGCTCTATCAGCAGTTAAAAGTTGAACTTGCCGATGTGCTGAAA
CCTGTTGCTCAGTCATTGGTATTGGAAGATAAAAAACCTTATGTGATCTTGATGGTGGGGGTAAATGGGGTTGGTAAAAC
AACTACTATCGGTAAATTAGCACGAAAATTCCAAGCGGAAGGAAAATCAGTGATGTTAGCGGCCGGCGATACGTTCCGTG
CGGCGGCCGTTGAACAGCTTCAAGTGTGGGGCGAACGCAATCACATTCCAGTCGTGGCACAAAGTACGGGGGCTGATTCT
GCGTCAGTGATTTTTGATGCAATGCAATCGGCAGCAGCAAAAGGGATTGATGTGTTAATCGCAGACACCGCAGGACGTTT
GCAAAACAAAAATAACTTAATGGACGAGTTGAAAAAAATAGTGCGAGTAATGAAAAAATATGATGAAACCGCACCGCACG
AAATTATGCTTACCCTTGATGCTGGTACAGGACAGAATGCGATCAGCCAAGCGAAACTGTTTAATGAAGCGGTTGGTTTA
ACGGGGATTACCTTAACAAAACTGGACGGTACTGCGAAAGGTGGGGTAATTTTTGCGATTGCGGATCAATTTAATATTCC
AATTCGCTTTATTGGGGTGGGTGAAAAAATTGATGATTTACGCTCATTTGATGCCGAAGAATTTATTGAAGCCTTATTTA
CTCACGAGGACGAGAAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(170-235)

SRP54-type protein, GTPase domain (SRP54)

(254-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.326

81.481

0.386