Detailed information NTG0349976

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KRP1_RS06925
• Genome accession: NZ_CP046069
• Coordinates: 1487978..1488982 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain KRP1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1482978..1493982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KRP1_RS06895 (KRP1_06945)	fghA	1483070..1483921 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
KRP1_RS06900 (KRP1_06950)	ispF	1483992..1484465 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KRP1_RS06905 (KRP1_06955)	truD	1484462..1485529 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
KRP1_RS06910 (KRP1_06960)	surE	1485517..1486266 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KRP1_RS06915 (KRP1_06965)	-	1486299..1486934 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KRP1_RS06920 (KRP1_06970)	-	1486980..1487873 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
KRP1_RS06925 (KRP1_06975)	rpoS	1487978..1488982 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KRP1_RS06930 (KRP1_06985)	fdxA	1489409..1489732 (-)	324	WP_003092272.1	ferredoxin FdxA	-
KRP1_RS06935 (KRP1_06990)	mutS	1489799..1492366 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KRP1_RS06940 (KRP1_06995)	-	1492492..1493499 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=349976 KRP1_RS06925 WP_003113871.1 1487978..1488982(+) (rpoS) [Pseudomonas aeruginosa strain KRP1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=349976 KRP1_RS06925 WP_003113871.1 1487978..1488982(+) (rpoS) [Pseudomonas aeruginosa strain KRP1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653