Detailed information NTG0349918

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: EPD17_RS04465
• Genome accession: NZ_CP037755
• Coordinates: 1054301..1055686 (-)
• Length: 461 a.a.
• NCBI ID: WP_132052127.1
• Uniprot ID: -
• Organism: Pseudocnuella soli strain 17J28-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1049301..1060686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPD17_RS04445	-	1049914..1051137 (-)	1224	WP_132052123.1	hypothetical protein	-
EPD17_RS04450	-	1051314..1051829 (-)	516	WP_204743298.1	glutathione peroxidase	-
EPD17_RS04455	-	1052012..1053373 (+)	1362	WP_132052125.1	choice-of-anchor Q domain-containing protein	-
EPD17_RS04460	-	1053414..1054145 (-)	732	WP_240040738.1	ComF family protein	-
EPD17_RS04465	radA	1054301..1055686 (-)	1386	WP_132052127.1	DNA repair protein RadA	Machinery gene
EPD17_RS04470	-	1056150..1056842 (+)	693	WP_132052129.1	zinc metallopeptidase	-
EPD17_RS04475	-	1057065..1060061 (+)	2997	WP_132052131.1	TonB-dependent receptor	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50946.59 Da
• Isoelectric Point: 5.7491

>NTDB_id=349918 EPD17_RS04465 WP_132052127.1 1054301..1055686(-) (radA) [Pseudocnuella soli strain 17J28-1]
MSKVKTGFFCQSCGYESAKWLGKCPGCQQWNTFVEELIQKDTKKGSAATDWKEYNGDNRTKKTVALQQVVAHEMPRTLTA
DPELNRVLGGGIVPGSIVLVAGEPGIGKSTLFLQMGLMMQGVTTLYISGEESGQQIKMRADRLQKENEDFYLLTETSTQT
IFAEIKKLKPELIIVDSIQTLESPFIESSAGSVSQIKECAAEFQQFAKETHTPVFLIGHITKEGNIAGPKVLEHMVDTVL
QFEGDRHYAYRILRTLKNRFGSTAEIGIYQMNEMGMSAVLNPSEILITQKEDALSGIAIAATLEGQRPLLIEVQALVTQS
VYGTPQRTVSGFDLRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGLKVEDPSIDLAVLCALLSSYEDVAIPHNICFAGEVG
LSGEIRAVNRVEQRIAEAEKLGFDKIIISKYSQKGLSTNRYNIEVVLMGQVEEVYRYLFNG

Nucleotide

• Length: 1386 bp

>NTDB_id=349918 EPD17_RS04465 WP_132052127.1 1054301..1055686(-) (radA) [Pseudocnuella soli strain 17J28-1]
ATGTCGAAAGTAAAAACAGGTTTTTTCTGTCAAAGTTGTGGTTATGAAAGTGCCAAGTGGTTGGGCAAATGTCCGGGCTG
CCAGCAATGGAATACGTTTGTTGAAGAACTCATTCAAAAGGATACAAAAAAAGGATCGGCAGCAACCGATTGGAAAGAAT
ACAACGGCGATAACCGCACAAAAAAAACAGTGGCGCTGCAACAAGTAGTAGCACACGAAATGCCTCGCACACTTACCGCC
GATCCCGAACTCAATCGTGTGTTGGGTGGTGGCATTGTTCCGGGCTCTATTGTATTGGTTGCCGGTGAACCAGGCATTGG
TAAATCAACGCTTTTTTTACAAATGGGATTGATGATGCAGGGTGTAACAACACTGTACATCAGTGGCGAGGAAAGCGGCC
AGCAAATAAAGATGCGTGCCGACCGGTTGCAAAAAGAAAACGAAGATTTTTACCTGCTTACCGAAACATCCACGCAAACC
ATTTTTGCAGAAATAAAAAAGCTGAAGCCCGAACTGATCATCGTTGATTCGATTCAAACATTGGAGTCGCCTTTTATTGA
ATCGTCCGCAGGAAGCGTATCGCAAATAAAAGAATGCGCCGCCGAATTCCAGCAGTTTGCAAAAGAAACGCATACGCCTG
TTTTTTTGATTGGCCACATTACTAAAGAAGGCAACATTGCCGGCCCCAAAGTGCTGGAGCATATGGTAGATACGGTGTTG
CAGTTTGAAGGCGACCGCCACTATGCATACCGCATTTTGCGAACGCTGAAAAACCGCTTTGGCTCCACTGCCGAAATTGG
AATTTATCAAATGAATGAAATGGGCATGAGTGCCGTGCTCAATCCCAGCGAAATACTGATCACGCAAAAAGAAGATGCAC
TCAGCGGCATTGCCATTGCGGCTACGCTTGAAGGGCAGCGCCCACTGCTCATTGAAGTGCAGGCACTGGTTACACAATCG
GTGTACGGCACGCCGCAACGCACCGTTAGTGGTTTTGACCTGCGCAGGCTGCAACTATTGTTGGCCGTGTTGGAAAAACG
CGGCGGATTTCATTTTGGCGTAAAAGATGTGTTCCTAAATATTGCCGGCGGCTTGAAAGTAGAAGATCCATCCATCGACC
TGGCGGTGTTGTGTGCCTTACTTTCTTCGTATGAAGATGTGGCCATTCCGCACAACATTTGCTTTGCCGGCGAAGTGGGC
CTCAGTGGCGAGATACGGGCTGTAAACCGCGTGGAGCAACGCATTGCGGAAGCGGAGAAATTAGGCTTTGATAAAATCAT
TATTTCCAAGTACAGTCAAAAAGGCCTGTCCACCAACCGGTATAATATAGAAGTAGTGTTGATGGGGCAAGTCGAAGAAG
TGTACCGCTATTTGTTTAATGGATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (78-224)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• Subunit ChlI of Mg-chelatase (ChlI) (346-430)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis SK321	49.13	99.783	0.49
radA	Streptococcus pneumoniae Rx1	48.913	99.783	0.488
radA	Streptococcus pneumoniae D39	48.913	99.783	0.488
radA	Streptococcus pneumoniae R6	48.913	99.783	0.488
radA	Streptococcus pneumoniae TIGR4	48.913	99.783	0.488
radA	Streptococcus mitis NCTC 12261	48.696	99.783	0.486
radA	Bacillus subtilis subsp. subtilis str. 168	48.38	100	0.486