Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   GJV01_RS11100 Genome accession   NZ_CP046061
Coordinates   2357315..2357671 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain 1811-13R031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2352315..2362671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV01_RS11075 fabF 2352527..2353771 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  GJV01_RS11080 pabC 2353771..2354586 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  GJV01_RS11085 mltG 2354592..2355641 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  GJV01_RS11090 tmk 2355670..2356302 (+) 633 WP_003122486.1 dTMP kinase -
  GJV01_RS11095 - 2356295..2357281 (+) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  GJV01_RS11100 pilZ 2357315..2357671 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  GJV01_RS11105 - 2357686..2358462 (+) 777 WP_003091117.1 TatD family hydrolase -
  GJV01_RS11110 - 2358688..2359821 (-) 1134 WP_023106226.1 aminotransferase class V-fold PLP-dependent enzyme -
  GJV01_RS11115 - 2359907..2360545 (+) 639 WP_023091594.1 TetR/AcrR family transcriptional regulator -
  GJV01_RS11120 - 2360712..2361608 (+) 897 WP_003091113.1 radical SAM protein -
  GJV01_RS11125 - 2361673..2362305 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=349883 GJV01_RS11100 WP_003091119.1 2357315..2357671(+) (pilZ) [Pseudomonas aeruginosa strain 1811-13R031]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=349883 GJV01_RS11100 WP_003091119.1 2357315..2357671(+) (pilZ) [Pseudomonas aeruginosa strain 1811-13R031]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449