Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GJV01_RS07695 Genome accession   NZ_CP046061
Coordinates   1628211..1629215 (+) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain 1811-13R031     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623211..1634215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV01_RS07665 fghA 1623303..1624154 (+) 852 WP_003113869.1 S-formylglutathione hydrolase -
  GJV01_RS07670 ispF 1624225..1624698 (+) 474 WP_023465018.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GJV01_RS07675 truD 1624695..1625762 (+) 1068 WP_023114621.1 tRNA pseudouridine(13) synthase TruD -
  GJV01_RS07680 surE 1625750..1626499 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  GJV01_RS07685 - 1626532..1627167 (+) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GJV01_RS07690 - 1627213..1628106 (+) 894 WP_003115226.1 peptidoglycan DD-metalloendopeptidase family protein -
  GJV01_RS07695 rpoS 1628211..1629215 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  GJV01_RS07700 fdxA 1629642..1629965 (-) 324 WP_003092272.1 ferredoxin FdxA -
  GJV01_RS07705 mutS 1630032..1632599 (-) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  GJV01_RS07710 - 1632725..1633732 (-) 1008 WP_003098486.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=349870 GJV01_RS07695 WP_003113871.1 1628211..1629215(+) (rpoS) [Pseudomonas aeruginosa strain 1811-13R031]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=349870 GJV01_RS07695 WP_003113871.1 1628211..1629215(+) (rpoS) [Pseudomonas aeruginosa strain 1811-13R031]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653

Multiple sequence alignment