Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   A9460_RS06405 Genome accession   NZ_CP037746
Coordinates   1266692..1267870 (-) Length   392 a.a.
NCBI ID   WP_039665145.1    Uniprot ID   A0AAE6CZZ9
Organism   Campylobacter volucris strain 2014D-0083     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261692..1272870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9460_RS06385 (A9460_06385) - 1262171..1262524 (-) 354 WP_039665149.1 hypothetical protein -
  A9460_RS06390 (A9460_06390) - 1262521..1263894 (-) 1374 WP_039665148.1 cytochrome P450 -
  A9460_RS06395 (A9460_06395) - 1263906..1265042 (-) 1137 WP_039665147.1 hypothetical protein -
  A9460_RS07935 - 1265196..1266695 (+) 1500 WP_039665146.1 SGNH/GDSL hydrolase family protein -
  A9460_RS06405 (A9460_06405) kpsS 1266692..1267870 (-) 1179 WP_039665145.1 capsular polysaccharide export protein Regulator
  A9460_RS06410 (A9460_06410) - 1267867..1269912 (-) 2046 WP_039665144.1 capsular polysaccharide export protein -
  A9460_RS08045 - 1269941..1271446 (-) 1506 WP_052243148.1 hypothetical protein -
  A9460_RS06425 (A9460_06425) cysC 1271443..1272027 (-) 585 WP_039665143.1 adenylyl-sulfate kinase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46542.07 Da        Isoelectric Point: 10.1955

>NTDB_id=349868 A9460_RS06405 WP_039665145.1 1266692..1267870(-) (kpsS) [Campylobacter volucris strain 2014D-0083]
MNLGKKLKKFSGKNVLLLQGPVGSFFYKISKKIPDANVYKINFNGGDFFFYPFKSVNYRGSLENLENFYINFFKEKNIQI
IIMYNDCRKIHEIAIKVAKEMGIEIWIFEEGYIRPNFITFEKDGVNANSTLPRDKEFYLNHKKFDKEYKIKNFSSTFKNM
AFASFLYWFFAALFAWYFNNSLHHRSLKFFDFTPWLLSLYRKKKYKITEKPINEKIINLKQKYFLAILQVFNDTQLSHHY
KKTTEKFIEEVIISFANHARAKSYLVFKHHPMDRGYKDYTKLIENLSLKYNVEGRILYVHDLHLPMLLSNARGTIVINST
VGLSALYHGSSLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDARLHAKFRNYVIYKTQINGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=349868 A9460_RS06405 WP_039665145.1 1266692..1267870(-) (kpsS) [Campylobacter volucris strain 2014D-0083]
ATGAATTTAGGTAAAAAATTAAAAAAATTTTCTGGAAAAAATGTTTTATTACTTCAAGGACCTGTTGGAAGTTTTTTTTA
TAAAATTTCTAAAAAGATACCCGATGCTAATGTGTATAAAATCAATTTTAATGGCGGAGATTTCTTTTTTTATCCTTTTA
AAAGTGTAAATTATAGAGGTAGTTTAGAAAATTTAGAAAATTTTTATATTAATTTTTTTAAAGAAAAAAATATTCAAATT
ATTATCATGTATAATGATTGTCGTAAAATTCATGAAATAGCCATTAAAGTAGCAAAAGAAATGGGTATAGAAATTTGGAT
ATTTGAAGAAGGCTATATAAGACCTAATTTTATAACCTTTGAAAAAGATGGAGTAAATGCAAATTCTACCTTGCCAAGAG
ATAAAGAATTTTATTTAAATCATAAAAAATTTGACAAAGAATACAAAATAAAAAATTTTTCTAGCACTTTTAAAAATATG
GCTTTTGCTTCGTTTTTGTATTGGTTTTTTGCTGCTTTGTTTGCTTGGTATTTTAATAATTCTTTGCATCATAGATCGTT
AAAGTTTTTTGATTTTACTCCTTGGCTTTTGTCTTTATATAGAAAGAAAAAATACAAGATCACTGAAAAACCAATCAATG
AAAAAATCATTAATCTCAAACAAAAATATTTTTTAGCCATTTTACAAGTTTTTAATGACACACAATTGTCCCATCATTAT
AAAAAAACTACGGAAAAATTTATAGAAGAAGTGATTATTTCTTTTGCTAATCATGCTAGAGCAAAATCTTATTTAGTTTT
TAAACATCACCCTATGGATAGAGGCTATAAAGACTATACTAAATTGATAGAAAATTTAAGTTTAAAATACAATGTAGAAG
GTCGAATTTTATATGTGCATGATTTGCATTTACCTATGCTTTTAAGCAACGCTAGAGGCACTATAGTTATAAATAGCACG
GTAGGACTTTCAGCCTTGTATCATGGGAGTTCTTTAAAGGTCATGGGAAAAGCATTTTATGATATAGAAGGATTAACCTA
TCAAAAAAGTTTGCATACTTTTTGGAAAGAATGTAGAGCTTATAAACCTGATGCAAGATTGCATGCTAAATTTAGAAATT
ATGTCATTTATAAAACTCAAATAAATGGGAATTTTTTTAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.785

100

0.633

Multiple sequence alignment