Detailed information NTG0349867

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: A9460_RS06070
• Genome accession: NZ_CP037746
• Coordinates: 1195130..1196515 (-)
• Length: 461 a.a.
• NCBI ID: WP_039666237.1
• Uniprot ID: -
• Organism: Campylobacter volucris strain 2014D-0083
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1190130..1201515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9460_RS06045 (A9460_06045)	-	1190619..1191368 (+)	750	WP_039665208.1	TIGR02757 family protein	-
A9460_RS06050 (A9460_06050)	-	1191353..1192108 (+)	756	WP_039665207.1	TSUP family transporter	-
A9460_RS06055 (A9460_06055)	-	1192105..1193268 (-)	1164	WP_132038053.1	type II secretion system F family protein	-
A9460_RS06060 (A9460_06060)	-	1193265..1194824 (-)	1560	WP_039665205.1	transformation system, type II secretion system ATPase CtsE	-
A9460_RS06065 (A9460_06065)	-	1194811..1195149 (-)	339	WP_052243152.1	transformation system, membrane protein CtsX	-
A9460_RS06070 (A9460_06070)	ctsD	1195130..1196515 (-)	1386	WP_039666237.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
A9460_RS06075 (A9460_06075)	-	1196493..1196819 (-)	327	WP_039665204.1	hypothetical protein	-
A9460_RS06080 (A9460_06080)	nifJ	1196822..1200376 (-)	3555	WP_039665203.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
A9460_RS06085 (A9460_06085)	-	1200496..1201140 (-)	645	WP_039665202.1	HAD family hydrolase	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 52395.19 Da
• Isoelectric Point: 8.2312

>NTDB_id=349867 A9460_RS06070 WP_039666237.1 1195130..1196515(-) (ctsD) [Campylobacter volucris strain 2014D-0083]
MIILLFISICFTQVFANSCHQRVFDISVDSKSTLLEILNELGKECGFSIIVKDSLAQKKLNTAQNYLHIRKMSLREIFNL
LLKENNLAYDYEKNILKIYGKVVKTFKIHYISSIREGQSITKASVDSRPRQGEYEHSNKEADNLVISTDRFDFWEKIAEE
IQALLDENTTKPIINTNAGIITLQATPYEITRVQNYLNDLNKRLKKQVLIDVSIVAVHLNKNHSSGINWQELAFRLNGDD
KDFIINKGGIKNINLKANIQTQAIINLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGSTISETYN
NYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVEDSQTLILGGLISKNSI
NNQNEINLLSKIPIFGLLFQGKQNIEDVSEIVFIIKPTIIKEDKKILNLKDLGFKNEDHMF

Nucleotide

• Length: 1386 bp

>NTDB_id=349867 A9460_RS06070 WP_039666237.1 1195130..1196515(-) (ctsD) [Campylobacter volucris strain 2014D-0083]
ATAATAATATTATTATTTATTAGTATATGTTTTACTCAAGTTTTTGCAAATTCATGTCATCAAAGGGTTTTTGATATCAG
TGTTGATTCTAAAAGTACATTATTAGAAATTTTAAATGAGCTTGGTAAAGAATGTGGCTTTAGTATCATTGTAAAAGATT
CTTTAGCGCAAAAGAAACTAAATACCGCTCAAAATTATCTTCACATTAGAAAAATGTCTTTAAGAGAAATTTTTAATCTT
TTGTTGAAAGAAAATAATCTTGCTTATGATTATGAAAAAAATATTTTAAAAATTTATGGAAAAGTAGTAAAGACTTTTAA
AATTCATTATATTAGCTCTATTAGAGAAGGACAAAGTATCACTAAAGCTTCAGTGGATTCAAGACCAAGACAAGGAGAAT
ATGAACATTCTAATAAAGAAGCAGATAATTTGGTTATAAGCACTGATAGGTTTGATTTTTGGGAGAAAATTGCAGAAGAA
ATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATCATTACCTTACAAGCTACTCC
ATATGAAATTACAAGGGTGCAAAATTATTTAAATGATTTAAATAAACGATTGAAAAAACAAGTTTTAATTGATGTGAGTA
TAGTTGCTGTACATTTAAATAAAAATCATTCTAGTGGAATTAATTGGCAAGAACTCGCTTTTAGGTTAAATGGCGATGAT
AAAGATTTTATCATAAATAAAGGTGGTATTAAAAATATCAATTTAAAAGCAAATATCCAAACTCAAGCAATTATAAATTT
ATTGCAAGAAAATGGTAAAACCACGGTGCTTTCTAATCCAAAACTTATGGCTTTAAATAATCAACAAGCAATTATTTCTA
TAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAAGGCACTGAAAATGGAAGTACAATTAGTGAAACTTATAAT
AATTATTCTATTTTTGTAGGAATTTTACTTAATATTTTGCCAGAAATTTCAGATGATCATAAGATTATGCTTAGGATAAA
TCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATCGTCAAAATAAACCAAGAAATATTGCGCCCGATACTATAC
AAAAAAAGCTTTCAACTGTTGTAGAAGTGGAAGATTCTCAAACTTTAATTTTAGGTGGTTTGATTAGTAAAAATAGCATT
AACAATCAAAATGAAATCAATTTACTTTCTAAAATACCTATTTTTGGATTATTATTTCAAGGTAAGCAAAATATAGAAGA
TGTTAGCGAAATTGTTTTTATCATCAAGCCAACTATAATCAAAGAAGATAAAAAGATACTAAATTTAAAAGATTTGGGTT
TTAAAAATGAAGATCATATGTTTTAG

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (267-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	59.701	100	0.607