Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   A9460_RS01880 Genome accession   NZ_CP037746
Coordinates   374187..375113 (+) Length   308 a.a.
NCBI ID   WP_039665923.1    Uniprot ID   A0AAE5YG63
Organism   Campylobacter volucris strain 2014D-0083     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 369187..380113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9460_RS01860 (A9460_01860) - 369935..370642 (+) 708 WP_039665926.1 flagellin modification protein, acylneuraminate cytidylyltransferase -
  A9460_RS01865 (A9460_01865) - 370642..371406 (+) 765 WP_039665925.1 glucosamine-6-P synthase, glutaminase subunit PtmA -
  A9460_RS01870 (A9460_01870) - 371394..373326 (+) 1933 Protein_359 motility associated factor glycosyltransferase family protein -
  A9460_RS01875 (A9460_01875) - 373331..374140 (-) 810 WP_039665924.1 glycosyltransferase family 2 protein -
  A9460_RS01880 (A9460_01880) waaF 374187..375113 (+) 927 WP_039665923.1 lipopolysaccharide heptosyltransferase II Regulator
  A9460_RS01885 (A9460_01885) - 375371..376603 (+) 1233 WP_235362398.1 MBOAT family O-acyltransferase -
  A9460_RS01890 (A9460_01890) - 376612..377694 (+) 1083 WP_039665922.1 hypothetical protein -
  A9460_RS01895 (A9460_01895) - 377780..378082 (+) 303 WP_039666305.1 HU family DNA-binding protein -
  A9460_RS01900 (A9460_01900) cysK 378166..379068 (+) 903 WP_039665921.1 cysteine synthase A -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34988.24 Da        Isoelectric Point: 10.4302

>NTDB_id=349857 A9460_RS01880 WP_039665923.1 374187..375113(+) (waaF) [Campylobacter volucris strain 2014D-0083]
MKIFINLPTWLGDAVMVSATIYAIKEKCPDANFLFYGSFVSTELFKNLQNSKILVENKKQRFSQIFKIRKELGKFDLAIS
FRSAFSSKIILNLIKAKKRFYFDKNQNKNEHQVLKYLKFIENSLNFKANSNSLKLPIKAKTTKKILGINAGAHYGSAKRW
NSEYFAQVAKEFASTHKIIIFGVKTEQKICDEIQNLLLKDGVQAKNLCGKTSIFTLCKNISMLDILITNDSGPMHIGAAY
GIKTIAIFGSTNFHQTSPWQKNARLAHLNLACMPCMKRICPLKHHACMNDLKPQIVIDKAKDLLKNDI

Nucleotide


Download         Length: 927 bp        

>NTDB_id=349857 A9460_RS01880 WP_039665923.1 374187..375113(+) (waaF) [Campylobacter volucris strain 2014D-0083]
ATGAAAATTTTTATAAATCTACCTACTTGGCTTGGCGATGCTGTTATGGTAAGTGCGACAATTTATGCTATAAAAGAAAA
ATGTCCAGATGCTAATTTTTTATTTTATGGTTCTTTTGTTAGCACAGAACTTTTTAAAAATTTACAAAATTCAAAAATAT
TAGTAGAAAATAAAAAACAAAGATTTTCTCAAATTTTTAAAATCAGAAAAGAACTTGGTAAATTTGATCTTGCTATTAGT
TTTAGATCGGCTTTTTCAAGTAAGATAATATTAAATTTAATAAAAGCAAAAAAAAGATTTTATTTTGATAAAAATCAAAA
TAAAAATGAACATCAAGTTTTAAAATACTTAAAATTTATAGAAAATTCTTTAAATTTTAAAGCTAATTCAAATTCTTTAA
AACTACCCATAAAAGCAAAAACTACGAAAAAAATTCTAGGGATAAATGCTGGAGCTCACTATGGAAGTGCTAAAAGATGG
AATAGTGAGTATTTTGCACAAGTAGCAAAAGAATTTGCATCTACTCATAAAATAATAATTTTTGGTGTAAAAACCGAACA
AAAAATATGCGATGAAATACAAAATTTACTTTTAAAAGATGGGGTGCAAGCTAAAAATTTATGTGGAAAAACTAGCATTT
TTACTTTATGTAAAAACATTTCTATGCTAGATATTTTAATCACTAACGATAGCGGACCTATGCACATAGGCGCAGCTTAT
GGAATAAAAACCATAGCTATTTTTGGATCGACTAATTTTCATCAAACATCACCTTGGCAAAAAAATGCAAGATTAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGAAAAGAATTTGTCCATTAAAGCATCACGCTTGTATGAATGATTTAAAACCAC
AAATTGTTATAGATAAAGCAAAGGATTTATTAAAAAATGATATTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(76-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.759

100

0.623

Multiple sequence alignment