Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   SYNPCCP_RS09985 Genome accession   NC_017039
Coordinates   2098290..2099807 (+) Length   505 a.a.
NCBI ID   WP_010873111.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. PCC-P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2093290..2104807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCCP_RS09960 (SYNPCCP_1910) ureB 2093550..2093867 (-) 318 WP_010873106.1 urease subunit beta -
  SYNPCCP_RS09965 (SYNPCCP_1911) - 2093903..2094367 (-) 465 WP_010873107.1 DUF6790 family protein -
  SYNPCCP_RS09970 (SYNPCCP_1912) - 2094445..2095401 (-) 957 WP_010873108.1 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase -
  SYNPCCP_RS09975 (SYNPCCP_1913) - 2095470..2096429 (+) 960 WP_010873109.1 DNA polymerase III subunit delta' -
  SYNPCCP_RS09980 (SYNPCCP_1914) urtA 2096748..2098088 (+) 1341 WP_010873110.1 urea ABC transporter substrate-binding protein -
  SYNPCCP_RS09985 (SYNPCCP_1915) radA/sms 2098290..2099807 (+) 1518 WP_010873111.1 DNA repair protein RadA Machinery gene
  SYNPCCP_RS09990 (SYNPCCP_1916) - 2099804..2100388 (-) 585 WP_020862273.1 pentapeptide repeat-containing protein -
  SYNPCCP_RS09995 (SYNPCCP_1917) - 2100596..2102218 (-) 1623 WP_010873113.1 sodium:proton antiporter -
  SYNPCCP_RS10000 (SYNPCCP_1918) - 2102266..2102739 (-) 474 WP_010873114.1 DUF2996 domain-containing protein -
  SYNPCCP_RS10005 (SYNPCCP_1919) nusB 2102770..2103435 (-) 666 WP_014407122.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54191.30 Da        Isoelectric Point: 7.4021

>NTDB_id=34979 SYNPCCP_RS09985 WP_010873111.1 2098290..2099807(+) (radA/sms) [Synechocystis sp. PCC 6803 substr. PCC-P]
MAKARTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSRSSKVKTGQPQAALTFSQIRQENQG
RFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQVAFQLATRLPRILYVSAEESGQQIKLRATRLGITQTVEPSQ
AQDGINNLAHDGNLFVLPETNLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHISLFI
VGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSGLQEVLNPSQLFLGSREEFMSG
TAITVACEGTRPLVVELQALVSPTSYASPRRSTTGVDYNRLLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAM
AIALVASFRDRVVDPTMIILGEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPKGQTGIESAGIKLIPVGKVFAAIAVAL
PANENTTDQGNGSEAKIEEDLGKKD

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=34979 SYNPCCP_RS09985 WP_010873111.1 2098290..2099807(+) (radA/sms) [Synechocystis sp. PCC 6803 substr. PCC-P]
ATGGCTAAAGCCCGGACAAAGTTTGTTTGCTCTGCCTGTGGGGCGGATCATGCCCAATGGTTTGGCCGCTGCCCCAAATG
CCATGAGTATGGAAGTTTGCAGGAGGAAATTGTCAATGCCGTTTCTAGTGGTACCAATCACCGTAGTTTAGGGGCGCAAA
AATCCCGTTCTTCCAAGGTAAAAACCGGCCAGCCCCAGGCGGCTTTAACTTTTTCCCAGATTCGCCAGGAAAATCAAGGG
CGTTTCCTCTCTGGTTACGGGGAGTTGGACCGGGTTTTGGGAGGGGGCATTGTGCCAGGGGCGTTAATTTTAATTGGCGG
AGATCCGGGCATTGGCAAATCAACTTTGTTGCTCCAGGTGGCTTTCCAGTTGGCCACCCGTTTGCCCCGGATTTTATACG
TTTCAGCGGAGGAATCAGGACAACAAATTAAGCTCCGAGCCACCCGCTTAGGCATTACCCAAACCGTTGAGCCAAGCCAA
GCTCAAGATGGCATAAACAATCTTGCCCACGATGGCAATTTATTTGTTTTACCGGAAACTAATTTGGACGATATTTTGCG
GGAATTGGAAGCCTTGCAACCCCAGGTGGCCATCATTGACAGTATTCAAAATTTATATTTTCCGGCCCTTAGTTCGGCCC
CTGGTTCCGTTTCCCAAGTGCGGGAATGTACGGGTTTATTAATGCAATTGGCCAAGCGAGATCACATTAGTTTGTTTATT
GTGGGGCACGTAACTAAAGAAGGGGCGATCGCCGGGCCGAAGGTTTTGGAGCATTTGGTGGATACGGTGTTGTATTTTCA
GGGCGATCGATTTGCATCCCATCGCTTGCTGAGATCCGTAAAAAATCGTTTTGGGGCCACCCAGGAAATCGGCATTTTTG
AAATGGTGCAATCGGGGCTGCAGGAAGTGCTCAACCCGTCCCAATTATTTTTGGGCAGTCGGGAGGAATTTATGTCCGGC
ACCGCCATCACTGTGGCTTGTGAAGGTACCCGCCCCTTGGTGGTGGAATTGCAAGCTTTAGTGAGTCCCACCAGTTACGC
TTCCCCTCGGCGATCGACTACTGGGGTGGACTACAATCGCCTTTTACAAGTTCTGGCTGTATTGGAAAAACGCCTGGGGG
TACCCCTCTCTAAATTGGATGCGTACCTATCGGTGGCGGGGGGTCTGGAGGTGGAAGAACCGGCGGTGGATTTGGCCATG
GCGATCGCCTTGGTGGCTAGTTTCCGGGACCGGGTGGTGGACCCAACCATGATTATTCTGGGGGAAATCGGTTTAGGCGG
CCAAATTCGTCCCGTTTCCCAGTTAGAAATTCGTTTAAAAGAAGCGGCAAAGTTAGGGTTCAAAAAGGCCATTGTGCCCA
AAGGTCAAACGGGCATTGAATCCGCTGGCATCAAGCTGATCCCTGTAGGCAAGGTCTTTGCGGCGATCGCCGTTGCTCTA
CCAGCCAACGAAAATACAACGGATCAAGGCAATGGGTCAGAAGCCAAAATTGAGGAGGACTTAGGTAAAAAGGATTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(389-454)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(87-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.34

95.446

0.461
  radA Streptococcus pneumoniae Rx1

48.807

91.287

0.446
  radA Streptococcus pneumoniae D39

48.807

91.287

0.446
  radA Streptococcus pneumoniae R6

48.807

91.287

0.446
  radA Streptococcus pneumoniae TIGR4

48.807

91.287

0.446
  radA Streptococcus mitis NCTC 12261

48.807

91.287

0.446
  radA Streptococcus mitis SK321

48.807

91.287

0.446

Multiple sequence alignment