Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GJV02_RS02065 Genome accession   NZ_CP046060
Coordinates   442382..442747 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 1811-18R001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437382..447747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV02_RS02035 pyrR 438004..438516 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GJV02_RS02040 ruvX 438628..439062 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  GJV02_RS02045 - 439062..439631 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  GJV02_RS02050 - 439680..440573 (-) 894 WP_003162015.1 energy transducer TonB -
  GJV02_RS02055 gshB 440720..441673 (-) 954 WP_003100943.1 glutathione synthase -
  GJV02_RS02060 pilG 441928..442335 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  GJV02_RS02065 pilH 442382..442747 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  GJV02_RS02070 - 442798..443334 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  GJV02_RS02075 pilJ 443419..445467 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  GJV02_RS02080 pilK 445528..446403 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=349750 GJV02_RS02065 WP_003084587.1 442382..442747(+) (pilH) [Pseudomonas aeruginosa strain 1811-18R001]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=349750 GJV02_RS02065 WP_003084587.1 442382..442747(+) (pilH) [Pseudomonas aeruginosa strain 1811-18R001]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364