Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GJ664_RS08555 Genome accession   NZ_CP046037
Coordinates   1713936..1714568 (-) Length   210 a.a.
NCBI ID   WP_035146917.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CBA3614     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708936..1719568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ664_RS08540 (GJ664_08540) - 1710252..1710875 (+) 624 WP_016265075.1 DnaD domain protein -
  GJ664_RS08545 (GJ664_08545) nth 1710899..1711549 (+) 651 WP_016265076.1 endonuclease III -
  GJ664_RS08550 (GJ664_08550) - 1711626..1713929 (-) 2304 WP_154255271.1 PBP1A family penicillin-binding protein -
  GJ664_RS08555 (GJ664_08555) recU 1713936..1714568 (-) 633 WP_035146917.1 Holliday junction resolvase RecU Machinery gene
  GJ664_RS08560 (GJ664_08560) - 1714644..1715204 (+) 561 WP_016265078.1 DUF1273 domain-containing protein -
  GJ664_RS08565 (GJ664_08565) gpsB 1715284..1715664 (+) 381 WP_016265079.1 cell division regulator GpsB -
  GJ664_RS08575 (GJ664_08575) - 1716154..1717305 (+) 1152 WP_011374623.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  GJ664_RS08580 (GJ664_08580) - 1717408..1718361 (+) 954 WP_195759365.1 phosphoglycerate dehydrogenase -
  GJ664_RS08585 (GJ664_08585) - 1718416..1718805 (-) 390 WP_011374625.1 DUF1398 domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24155.41 Da        Isoelectric Point: 9.4518

>NTDB_id=349727 GJ664_RS08555 WP_035146917.1 1713936..1714568(-) (recU) [Latilactobacillus sakei strain CBA3614]
MAFHYPNGQPYSNHETKQPKKQGRHTSPTTLYGKRGMSLEEEINDSNQYYRLRDAAVIYKKPTPIQIVKVDYPARSQAVI
KEAYFKQASTTDYNGIYQGHYVDFEAKETKNKTSFPFQNFHQHQIDHFRACLQQGGVCFVIMKFVPLQRLFVYPANLLIT
QWDNQATGGRKSIPLAAIVADGFEIQYQLNPSIPYLEAVDQLIARHHKGV

Nucleotide


Download         Length: 633 bp        

>NTDB_id=349727 GJ664_RS08555 WP_035146917.1 1713936..1714568(-) (recU) [Latilactobacillus sakei strain CBA3614]
ATGGCCTTTCATTATCCAAACGGACAGCCCTACTCAAATCATGAAACAAAACAGCCTAAAAAGCAAGGGCGACATACTAG
TCCAACCACCTTATACGGTAAACGCGGTATGTCATTAGAAGAAGAGATCAACGATAGTAATCAATATTATCGACTACGTG
ATGCTGCGGTTATCTATAAGAAACCCACCCCTATTCAGATCGTTAAGGTTGATTATCCAGCACGTAGTCAAGCTGTTATT
AAGGAAGCCTACTTTAAGCAAGCTTCAACAACGGATTATAATGGCATCTATCAGGGGCACTATGTGGATTTTGAAGCGAA
GGAAACTAAGAATAAAACGTCATTTCCGTTCCAAAACTTTCACCAACATCAAATTGATCATTTTAGAGCTTGCTTACAAC
AAGGCGGGGTTTGTTTTGTGATTATGAAGTTCGTCCCACTTCAACGTTTATTTGTGTATCCGGCAAACTTATTGATTACA
CAATGGGACAATCAAGCAACTGGTGGTCGGAAGTCAATTCCACTAGCGGCGATCGTTGCCGATGGGTTTGAAATTCAGTA
TCAATTAAACCCAAGTATTCCCTATTTAGAGGCCGTCGATCAATTAATCGCACGCCACCACAAAGGAGTTTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(35-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.246

94.762

0.467

Multiple sequence alignment