Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E0Z07_RS05855 Genome accession   NZ_CP037427
Coordinates   1269714..1271084 (+) Length   456 a.a.
NCBI ID   WP_006257778.1    Uniprot ID   A0AAC9ISS3
Organism   Myroides odoratimimus strain G13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264714..1276084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z07_RS05835 (E0Z07_05835) glmS 1265085..1266929 (+) 1845 WP_041888359.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  E0Z07_RS05840 (E0Z07_05840) atpD 1267083..1268594 (+) 1512 WP_006257781.1 F0F1 ATP synthase subunit beta -
  E0Z07_RS05845 (E0Z07_05845) - 1268621..1268902 (+) 282 WP_006266097.1 F0F1 ATP synthase subunit epsilon -
  E0Z07_RS05850 (E0Z07_05850) - 1268965..1269525 (-) 561 WP_131540456.1 hypothetical protein -
  E0Z07_RS05855 (E0Z07_05855) radA 1269714..1271084 (+) 1371 WP_006257778.1 DNA repair protein RadA Machinery gene
  E0Z07_RS05860 (E0Z07_05860) - 1271101..1272741 (+) 1641 WP_131540457.1 DUF4139 domain-containing protein -
  E0Z07_RS05865 (E0Z07_05865) - 1272812..1273231 (-) 420 WP_131540458.1 hypothetical protein -
  E0Z07_RS05870 (E0Z07_05870) - 1273260..1273691 (-) 432 WP_131540460.1 hypothetical protein -
  E0Z07_RS05880 (E0Z07_05880) - 1274043..1275791 (+) 1749 WP_131540461.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50226.73 Da        Isoelectric Point: 6.2746

>NTDB_id=349716 E0Z07_RS05855 WP_006257778.1 1269714..1271084(+) (radA) [Myroides odoratimimus strain G13]
MAKVKTAFFCQSCGTQYAKWQGQCNACKEWNTLVEEVIQKEEKTAWKAVSSSPNTMKKVAKPLKVREIDSTEEIRMNTMD
GELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQISLRLPFKTLYVSGEESQKQIKMRAERINPANDNCYILTETNTQNIF
RQIEEIQPDVLIIDSIQTLHTEYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKMLEHMVDTVLQF
EGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKEEELSGTAIAATLEGMRPLMVEVQALVSTAVY
GTPQRSATGYNLKRLNMILAVLEKRAGFRLGQKDVFLNITGGITVDDPAIDLGVVAAILSSDQDMSIGKDFTFAGEVGLS
GEIRPVNRVDQRIQEAEKLGFSTIFVSKYNKISHTGRGIKVVLVTKIEDVVEYLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=349716 E0Z07_RS05855 WP_006257778.1 1269714..1271084(+) (radA) [Myroides odoratimimus strain G13]
ATGGCAAAGGTAAAGACGGCTTTTTTCTGTCAGAGTTGTGGTACACAATACGCTAAATGGCAAGGACAATGTAATGCATG
TAAAGAGTGGAATACACTTGTAGAGGAGGTAATCCAAAAAGAAGAAAAGACAGCGTGGAAAGCAGTAAGTAGTTCTCCTA
ATACCATGAAGAAGGTAGCGAAGCCTCTAAAGGTACGAGAGATTGACAGTACAGAGGAGATTCGTATGAATACTATGGAT
GGTGAACTTAATCGCGTTTTAGGTGGTGGATTAGTTCCTGGCTCTATGGTGCTTTTGGGTGGTGAGCCTGGGATAGGAAA
AAGTACATTATTATTACAGATATCTTTGCGCTTACCTTTTAAAACTCTTTATGTATCAGGAGAGGAGAGTCAGAAACAGA
TAAAGATGAGGGCAGAGCGTATTAATCCTGCTAATGACAACTGTTATATCCTCACAGAAACTAATACACAGAATATCTTT
CGTCAAATAGAGGAGATACAACCTGATGTGTTAATCATTGACTCTATTCAAACTTTGCATACCGAGTATATTGAATCTTC
TGCTGGGACAGTGTCTCAGATAAAAGAGTGTACTGCAGAACTTACTAAATTTGCTAAAGAAACTGGAACTCCGGTGTTGA
TTATTGGACATATTACAAAGGATGGAAGTATAGCAGGGCCAAAAATGCTAGAGCACATGGTGGATACTGTACTACAGTTT
GAAGGAGATAGAAATCATGTGTATAGAATACTAAGAGCGAATAAGAATCGTTTTGGTTCTACGGCTGAGCTTGGTATTTA
TGAGATGCAAGGAAGTGGTCTTAGAGAGGTGTCTAATCCTTCTGAAATACTAATATCGCATAAGGAAGAAGAGTTATCAG
GTACAGCCATCGCAGCTACTTTAGAAGGAATGAGACCTTTGATGGTAGAAGTACAAGCGTTAGTGAGTACTGCTGTATAT
GGTACTCCGCAGCGTAGTGCTACGGGATATAATCTGAAACGACTGAATATGATCTTAGCAGTATTAGAAAAAAGAGCTGG
ATTTAGATTAGGGCAGAAAGACGTATTCTTAAATATCACAGGTGGTATTACTGTAGATGACCCTGCTATTGACTTAGGGG
TGGTGGCAGCTATTCTATCTTCTGATCAAGATATGTCTATTGGTAAGGACTTCACATTCGCTGGAGAGGTAGGACTGTCT
GGTGAGATAAGACCTGTAAATAGAGTAGATCAACGCATACAAGAAGCAGAGAAGCTTGGTTTCTCTACTATTTTTGTTTC
AAAATATAATAAGATTAGTCATACAGGAAGAGGAATTAAGGTTGTTCTAGTGACTAAGATTGAAGATGTAGTCGAATACC
TCTTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.348

100

0.498
  radA Streptococcus pneumoniae Rx1

49.455

100

0.498
  radA Streptococcus pneumoniae D39

49.455

100

0.498
  radA Streptococcus pneumoniae R6

49.455

100

0.498
  radA Streptococcus pneumoniae TIGR4

49.455

100

0.498
  radA Streptococcus mitis NCTC 12261

49.455

100

0.498
  radA Streptococcus mitis SK321

49.455

100

0.498

Multiple sequence alignment