Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMO_RS05740 Genome accession   NC_013016
Coordinates   1078297..1080042 (-) Length   581 a.a.
NCBI ID   WP_002259666.1    Uniprot ID   C6S752
Organism   Neisseria meningitidis alpha14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1073297..1085042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS05720 (NMO_1041) - 1073509..1073943 (+) 435 WP_015815596.1 hypothetical protein -
  NMO_RS05725 (NMO_1042) - 1074002..1074271 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  NMO_RS05730 (NMO_1043) lon 1074453..1076915 (-) 2463 WP_015815597.1 endopeptidase La -
  NMO_RS05735 (NMO_1044) - 1077166..1078269 (+) 1104 WP_015815598.1 methyltransferase -
  NMO_RS05740 (NMO_1045) recD 1078297..1080042 (-) 1746 WP_002259666.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMO_RS05745 (NMO_1046) lolD 1080110..1080805 (-) 696 WP_002259667.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMO_RS05750 (NMO_1047) - 1080798..1082045 (-) 1248 WP_002259668.1 lipoprotein-releasing ABC transporter permease subunit -
  NMO_RS05755 (NMO_1049) - 1082250..1082534 (+) 285 WP_015815600.1 hypothetical protein -
  NMO_RS05760 (NMO_1050) recR 1082590..1083207 (-) 618 WP_002217147.1 recombination mediator RecR -
  NMO_RS05765 (NMO_1051) - 1083274..1084812 (-) 1539 WP_002246211.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62717.33 Da        Isoelectric Point: 6.2394

>NTDB_id=34971 NMO_RS05740 WP_002259666.1 1078297..1080042(-) (recD) [Neisseria meningitidis alpha14]
MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGKDENLPNIALAAPTGKAAAHMARALHRAINGFDALEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSRGLLYTAITRAREKFVFFGGEEAFRQAA
ATVKARQTALGSMLGRVFSQG

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=34971 NMO_RS05740 WP_002259666.1 1078297..1080042(-) (recD) [Neisseria meningitidis alpha14]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTTGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTAAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCTGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGACGCGCTTTCGGGCTTGAGCAGAG
GGCTGCTTTACACAGCCATTACCCGCGCGAGGGAAAAGTTCGTATTTTTCGGCGGGGAAGAAGCCTTCCGGCAAGCCGCC
GCCACCGTCAAAGCGCGTCAGACGGCATTGGGCAGTATGCTTGGGCGGGTATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6S752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.31

99.828

0.941

Multiple sequence alignment