Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   E0Z08_RS16970 Genome accession   NZ_CP037424
Coordinates   3413712..3414239 (-) Length   175 a.a.
NCBI ID   WP_005401352.1    Uniprot ID   A0A7H8SJL4
Organism   Acinetobacter johnsonii strain M19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3412333..3412890 3413712..3414239 flank 822


Gene organization within MGE regions


Location: 3412333..3414239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS16965 (E0Z08_16965) - 3412901..3413647 (-) 747 Protein_3286 AMIN domain-containing protein -
  E0Z08_RS16970 (E0Z08_16970) pilP 3413712..3414239 (-) 528 WP_005401352.1 pilus assembly protein PilP Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19359.58 Da        Isoelectric Point: 7.2428

>NTDB_id=349704 E0Z08_RS16970 WP_005401352.1 3413712..3414239(-) (pilP) [Acinetobacter johnsonii strain M19]
MKHQNLLLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYLNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIILDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=349704 E0Z08_RS16970 WP_005401352.1 3413712..3414239(-) (pilP) [Acinetobacter johnsonii strain M19]
ATGAAACATCAAAACCTCTTACTTAGTCTCTGCGTAGGACTATTCCTTGTCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAGCCAGCGCCAGATTTCCCACCTGTACCGACCTTTA
ACTATGCTGCGCACCAATTAAAGAGCCCGTTTATGCCAAGCTCTTTAGCGGCTGAACTGAAGATTATGGCTGGAAAGCGT
GTCTATCTAAACCTATCGCGCCAATTACAACCCTTGGAAAGTTATGCGATTGAATCGCTTAACATGAAAGGAAGCATGCG
CGGACAAAATGGACAAATTTTGGCGTTGATTCAAACACCGGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCTACACAAATTGATTTGATTGAAATTATTCTGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SJL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76

100

0.76
  comL Acinetobacter baylyi ADP1

70.286

100

0.703

Multiple sequence alignment