Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   E0Z08_RS16160 Genome accession   NZ_CP037424
Coordinates   3264044..3264901 (-) Length   285 a.a.
NCBI ID   WP_062032467.1    Uniprot ID   A0A7H8SLC5
Organism   Acinetobacter johnsonii strain M19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3259044..3269901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS16140 (E0Z08_16140) miaB 3260377..3261834 (+) 1458 WP_078389866.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  E0Z08_RS16145 (E0Z08_16145) - 3261873..3262949 (+) 1077 WP_004977846.1 PhoH family protein -
  E0Z08_RS16150 (E0Z08_16150) ybeY 3263007..3263486 (+) 480 WP_078389867.1 rRNA maturation RNase YbeY -
  E0Z08_RS16155 (E0Z08_16155) - 3263588..3263998 (+) 411 WP_125274118.1 hypothetical protein -
  E0Z08_RS16160 (E0Z08_16160) tonB2 3264044..3264901 (-) 858 WP_062032467.1 energy transducer TonB Machinery gene
  E0Z08_RS16165 (E0Z08_16165) - 3265162..3265839 (+) 678 WP_125274119.1 hypothetical protein -
  E0Z08_RS16170 (E0Z08_16170) - 3265995..3266705 (+) 711 WP_078389870.1 DUF3108 domain-containing protein -
  E0Z08_RS16175 (E0Z08_16175) - 3266796..3267371 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  E0Z08_RS19255 - 3267648..3268142 (+) 495 WP_227518665.1 GAF domain-containing protein -
  E0Z08_RS19260 - 3268299..3268700 (+) 402 WP_227518538.1 GGDEF domain-containing protein -
  E0Z08_RS16185 (E0Z08_16185) - 3268912..3269286 (+) 375 WP_004691247.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32599.09 Da        Isoelectric Point: 6.3661

>NTDB_id=349699 E0Z08_RS16160 WP_062032467.1 3264044..3264901(-) (tonB2) [Acinetobacter johnsonii strain M19]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=349699 E0Z08_RS16160 WP_062032467.1 3264044..3264901(-) (tonB2) [Acinetobacter johnsonii strain M19]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTACTGGCGGTATTTTTGCATCTCGTGAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCCGTTACCTTGCGTCCTTCTGATC
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAATCACATCGCATGTCG
AGTGACATGCCTGCACCGATGCTTGAGCAAAGTACAGGTGAGCAGCAGCGCGAGACTTTAGAGCAGATTCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTGATGACGACTTTAAGCTGGCAAAAACAAGCTGAGGATAATCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTTGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCTATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTT
GATGAGGCTGCAAAAGCGTCGGTGCGTAAGGCCGCACCATTCGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCGGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SLC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73

Multiple sequence alignment