Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E0Z08_RS03035 Genome accession   NZ_CP037424
Coordinates   654731..655129 (+) Length   132 a.a.
NCBI ID   WP_029574943.1    Uniprot ID   A0AAJ6IBM2
Organism   Acinetobacter johnsonii strain M19     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 649731..660129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS03020 (E0Z08_03020) - 650719..653025 (+) 2307 WP_004979149.1 RelA/SpoT family protein -
  E0Z08_RS03025 (E0Z08_03025) - 653065..653832 (-) 768 WP_010325928.1 SDR family oxidoreductase -
  E0Z08_RS03030 (E0Z08_03030) mazG 653951..654712 (+) 762 WP_131229950.1 nucleoside triphosphate pyrophosphohydrolase -
  E0Z08_RS03035 (E0Z08_03035) comEA 654731..655129 (+) 399 WP_029574943.1 ComEA family DNA-binding protein Machinery gene
  E0Z08_RS03040 (E0Z08_03040) pcnB 655267..656736 (+) 1470 WP_010325931.1 polynucleotide adenylyltransferase PcnB -
  E0Z08_RS03045 (E0Z08_03045) folK 656733..657221 (+) 489 WP_010325932.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  E0Z08_RS03050 (E0Z08_03050) panB 657258..658067 (+) 810 WP_010325933.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  E0Z08_RS03055 (E0Z08_03055) panC 658071..658913 (+) 843 WP_010325934.1 pantoate--beta-alanine ligase -
  E0Z08_RS03060 (E0Z08_03060) rapZ 658940..659791 (+) 852 WP_004692298.1 RNase adapter RapZ -
  E0Z08_RS03065 (E0Z08_03065) - 659788..660057 (+) 270 WP_010325935.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14697.19 Da        Isoelectric Point: 10.8498

>NTDB_id=349683 E0Z08_RS03035 WP_029574943.1 654731..655129(+) (comEA) [Acinetobacter johnsonii strain M19]
MIKIKVSLLIIALLLLSLLAWIPSSYAQSFDQNYLNWKAEQQVWDDRIQAPKSVKRAVSPVQAQPVSSTNKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=349683 E0Z08_RS03035 WP_029574943.1 654731..655129(+) (comEA) [Acinetobacter johnsonii strain M19]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCGTGGATACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTATCTGAACTGGAAAGCAGAGCAGCAGGTGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTCGAGCACAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAGCTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACTCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.918

92.424

0.508
  comEA Acinetobacter baumannii D1279779

52.419

93.939

0.492

Multiple sequence alignment