Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   E0Z08_RS01920 Genome accession   NZ_CP037424
Coordinates   417730..419952 (-) Length   740 a.a.
NCBI ID   WP_131229890.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain M19     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412730..424952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS01895 (E0Z08_01895) - 412764..413120 (-) 357 WP_058868814.1 chaperone modulator CbpM -
  E0Z08_RS01900 (E0Z08_01900) - 413131..414084 (-) 954 WP_058868815.1 DnaJ C-terminal domain-containing protein -
  E0Z08_RS01905 (E0Z08_01905) - 414228..414680 (-) 453 WP_058868816.1 DUF2147 domain-containing protein -
  E0Z08_RS01910 (E0Z08_01910) - 414880..415755 (-) 876 WP_058868817.1 Hsp33 family molecular chaperone HslO -
  E0Z08_RS01915 (E0Z08_01915) - 415806..417647 (-) 1842 WP_131229888.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  E0Z08_RS01920 (E0Z08_01920) priA 417730..419952 (-) 2223 WP_131229890.1 primosomal protein N' Machinery gene
  E0Z08_RS01925 (E0Z08_01925) gspF 420105..421310 (+) 1206 WP_058868820.1 type II secretion system inner membrane protein GspF -
  E0Z08_RS01930 (E0Z08_01930) gspG 421344..421781 (+) 438 WP_058868821.1 type II secretion system major pseudopilin GspG -
  E0Z08_RS01935 (E0Z08_01935) - 422065..422400 (+) 336 WP_058868822.1 hypothetical protein -
  E0Z08_RS01940 (E0Z08_01940) - 422562..422900 (+) 339 WP_058868823.1 tRNA-binding protein -
  E0Z08_RS01945 (E0Z08_01945) lnt 422967..424526 (-) 1560 WP_131229892.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84234.15 Da        Isoelectric Point: 8.8797

>NTDB_id=349680 E0Z08_RS01920 WP_131229890.1 417730..419952(-) (priA) [Acinetobacter johnsonii strain M19]
MPENTLSTTQSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQVMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEILKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQVLRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=349680 E0Z08_RS01920 WP_131229890.1 417730..419952(-) (priA) [Acinetobacter johnsonii strain M19]
ATGCCAGAAAATACACTTTCCACCACACAAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGGGA
AGTGATGCATGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCTTATAACCTACTGGCGCGAATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACAGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACGGCGACCTTAAAAGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCTCAAGACTTTAAACCGCAAGTTATGACACTGGCGCAAATGCCCCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACCGGTAGTGGGAAAACT
GAAGTCTATTTACAAGTCATGCAAGAGATTTTAAAACAAGGCAAACAGGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTTCAAGCCTGGCAAAGTGCGCAAACGGGCAAAGCCTCAATTGTGATTGGCACACGTTCTGCCATCTATACGCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGATCTATCTTTCAAGCAACAAGAAGGCTTTCGCTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAGAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCGAAGT
GCCCACATTGCGATGCCAATTTTACCGTGCATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCCAACTTTGATGTAATTCGGGTGGATCGTGACTCGACCAGTCGGGTCGGTAGTTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGTACTCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATTGACTCAGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTTGCGGGACGTGCTGGGCGCGGTGAGAAAAAAGGCGAAGTGTATTTACAAACTTTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTAGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGTACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709

Multiple sequence alignment