Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   E0Z08_RS01380 Genome accession   NZ_CP037424
Coordinates   297941..298264 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain M19     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 292941..303264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS01355 (E0Z08_01355) hemC 293604..294524 (+) 921 WP_058868746.1 hydroxymethylbilane synthase -
  E0Z08_RS01360 (E0Z08_01360) - 294537..295316 (+) 780 WP_058868747.1 uroporphyrinogen-III synthase -
  E0Z08_RS01365 (E0Z08_01365) - 295313..296155 (+) 843 WP_058868748.1 hypothetical protein -
  E0Z08_RS01370 (E0Z08_01370) - 296160..297353 (+) 1194 WP_131229863.1 heme biosynthesis protein HemY -
  E0Z08_RS01375 (E0Z08_01375) - 297361..297789 (+) 429 WP_058868750.1 acyl-CoA thioesterase -
  E0Z08_RS01380 (E0Z08_01380) hns 297941..298264 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  E0Z08_RS01385 (E0Z08_01385) gspN 298462..299172 (+) 711 WP_058868751.1 type II secretion system protein N -
  E0Z08_RS01390 (E0Z08_01390) - 299172..299996 (+) 825 WP_039890327.1 type II secretion system protein N -
  E0Z08_RS01395 (E0Z08_01395) gspD 300036..302396 (+) 2361 WP_131229865.1 type II secretion system secretin GspD -
  E0Z08_RS01400 (E0Z08_01400) - 302480..303226 (+) 747 WP_058868753.1 FHA domain-containing protein -

Sequence


Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=349676 E0Z08_RS01380 WP_004692786.1 297941..298264(+) (hns) [Acinetobacter johnsonii strain M19]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=349676 E0Z08_RS01380 WP_004692786.1 297941..298264(+) (hns) [Acinetobacter johnsonii strain M19]
ATGCCAGATATTAGTAATTTGTCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains


Predicted by InterproScan.

(11-101)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86


Multiple sequence alignment