Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   E0Z08_RS01235 Genome accession   NZ_CP037424
Coordinates   266877..268445 (-) Length   522 a.a.
NCBI ID   WP_131229856.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain M19     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 261877..273445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS01220 (E0Z08_01220) gpmI 262694..264241 (+) 1548 WP_131229850.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  E0Z08_RS01225 (E0Z08_01225) - 264260..265435 (+) 1176 WP_131229852.1 S41 family peptidase -
  E0Z08_RS01230 (E0Z08_01230) pilR 265440..266804 (-) 1365 WP_373430797.1 sigma-54-dependent transcriptional regulator Regulator
  E0Z08_RS01235 (E0Z08_01235) pilS 266877..268445 (-) 1569 WP_131229856.1 sensor histidine kinase Regulator
  E0Z08_RS01240 (E0Z08_01240) - 268467..269102 (-) 636 WP_010325697.1 response regulator -
  E0Z08_RS01245 (E0Z08_01245) - 269318..270373 (+) 1056 WP_125273423.1 serine hydrolase -
  E0Z08_RS01250 (E0Z08_01250) thrC 270460..271599 (-) 1140 WP_004692833.1 threonine synthase -
  E0Z08_RS01255 (E0Z08_01255) - 271665..272969 (-) 1305 WP_131229857.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59602.10 Da        Isoelectric Point: 6.4937

>NTDB_id=349674 E0Z08_RS01235 WP_131229856.1 266877..268445(-) (pilS) [Acinetobacter johnsonii strain M19]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIIDVISLSLLTFATDGPNLQLSLLFVITIFASCVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAHDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLQNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIHIRVYSYKNLVHIDVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=349674 E0Z08_RS01235 WP_131229856.1 266877..268445(-) (pilS) [Acinetobacter johnsonii strain M19]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTTTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGCTGTTTATTGTTGGTTTATCTGCTGACTTATGAGCAACTGTTTTCCAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCATCGATGTCATTAGCCTCAGCTTACTCACTTTCGCCACCGACGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCTCTTGTGTATTGGTCGATAAACAAAAAGCACTCATCATTACCTTGATTGCTGTGA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGATCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGATCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCAGCCTGTGCATTATTGGGTATCTCCCCGATTTATGCTCACGATAAA
TATCCTTTGTACAAAGCACAGCCTGATTTATTTGAACTCCTCAAATTCGACCAACTGAAGAATGGAGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAACCAAACACTGACCTTATTCG
TCCTACAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGTATT
GCCCATGAAATCCGCAATCCATTGGCTGCCATCACCCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACAGAACATGATCGCCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCAACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCACATTCGAGTCTATAGCTATAAAAACCTCGTCCACATTG
ATGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.077

99.808

0.6

Multiple sequence alignment