Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EYS44_RS14945 Genome accession   NZ_CP037417
Coordinates   3049236..3049880 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain LB002     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044236..3054880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYS44_RS14910 (EYS44_14905) - 3045421..3045852 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  EYS44_RS14915 (EYS44_14910) - 3045852..3046193 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  EYS44_RS14920 (EYS44_14915) - 3046186..3047667 (+) 1482 WP_014305717.1 Na+/H+ antiporter subunit D -
  EYS44_RS14925 (EYS44_14920) - 3047673..3048149 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  EYS44_RS14930 (EYS44_14925) - 3048149..3048433 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  EYS44_RS14935 (EYS44_14930) mnhG 3048417..3048791 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  EYS44_RS14940 (EYS44_14935) - 3048831..3049214 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  EYS44_RS14945 (EYS44_14940) comA 3049236..3049880 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  EYS44_RS14950 (EYS44_14945) comP 3049961..3052252 (-) 2292 WP_083058699.1 histidine kinase Regulator
  EYS44_RS14955 (EYS44_14950) comX 3052264..3052428 (-) 165 WP_007613432.1 competence pheromone ComX -
  EYS44_RS14960 (EYS44_14955) - 3052428..3053306 (-) 879 WP_024085740.1 polyprenyl synthetase family protein -
  EYS44_RS14965 (EYS44_14960) degQ 3053491..3053631 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  EYS44_RS14970 (EYS44_14965) - 3054097..3054438 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=349652 EYS44_RS14945 WP_003152052.1 3049236..3049880(-) (comA) [Bacillus velezensis strain LB002]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=349652 EYS44_RS14945 WP_003152052.1 3049236..3049880(-) (comA) [Bacillus velezensis strain LB002]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment