Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GJH08_RS16755 Genome accession   NZ_CP046025
Coordinates   3441157..3441762 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain C439     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3436157..3446762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJH08_RS16735 (GJH08_16745) aes 3436194..3437153 (+) 960 WP_000801813.1 acetyl esterase -
  GJH08_RS16740 (GJH08_16750) hemH 3437150..3438112 (-) 963 WP_001250103.1 ferrochelatase -
  GJH08_RS16745 (GJH08_16755) adk 3438348..3438992 (-) 645 WP_001220233.1 adenylate kinase -
  GJH08_RS16750 (GJH08_16760) htpG 3439173..3441047 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  GJH08_RS16755 (GJH08_16765) recR 3441157..3441762 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GJH08_RS16760 (GJH08_16770) ybaB 3441762..3442091 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GJH08_RS16765 (GJH08_16775) dnaX 3442144..3444075 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  GJH08_RS16770 (GJH08_16780) apt 3444204..3444755 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GJH08_RS16775 (GJH08_16785) ybaN 3444908..3445285 (-) 378 WP_001188905.1 DUF454 family protein -
  GJH08_RS16780 (GJH08_16790) priC 3445355..3445882 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  GJH08_RS16785 (GJH08_16795) rsmS 3445896..3446057 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=349633 GJH08_RS16755 WP_001195025.1 3441157..3441762(-) (recR) [Escherichia coli strain C439]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=349633 GJH08_RS16755 WP_001195025.1 3441157..3441762(-) (recR) [Escherichia coli strain C439]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment