Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GJH08_RS05130 Genome accession   NZ_CP046025
Coordinates   1074266..1074781 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain C439     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069266..1079781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJH08_RS05085 (GJH08_05095) csrA 1069853..1070038 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GJH08_RS05115 (GJH08_05125) yqaB 1071496..1072062 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GJH08_RS05120 (GJH08_05130) yqaA 1072059..1072487 (+) 429 WP_001287454.1 YqaA family protein -
  GJH08_RS05125 (GJH08_05135) gshA 1072560..1074116 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GJH08_RS05130 (GJH08_05140) luxS 1074266..1074781 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GJH08_RS05135 (GJH08_05145) emrB 1074845..1076383 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GJH08_RS05140 (GJH08_05150) emrA 1076400..1077572 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GJH08_RS05145 (GJH08_05155) emrR 1077699..1078229 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GJH08_RS05150 (GJH08_05160) ygaH 1078320..1078655 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GJH08_RS05155 (GJH08_05165) ygaZ 1078645..1079382 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=349602 GJH08_RS05130 WP_001130211.1 1074266..1074781(+) (luxS) [Escherichia coli strain C439]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=349602 GJH08_RS05130 WP_001130211.1 1074266..1074781(+) (luxS) [Escherichia coli strain C439]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment