Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | E0L14_RS06985 | Genome accession | NZ_CP036555 |
| Coordinates | 1597055..1598422 (-) | Length | 455 a.a. |
| NCBI ID | WP_005784538.1 | Uniprot ID | A0A015YPZ3 |
| Organism | Bacteroides fragilis strain CCUG 4856 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1592055..1603422
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0L14_RS06970 (E0L14_06970) | - | 1594390..1594986 (-) | 597 | WP_011202071.1 | helix-turn-helix transcriptional regulator | - |
| E0L14_RS06975 (E0L14_06975) | - | 1594994..1596583 (-) | 1590 | WP_005784534.1 | FAD-dependent protein | - |
| E0L14_RS06980 (E0L14_06980) | - | 1596628..1596999 (-) | 372 | WP_005784536.1 | GxxExxY protein | - |
| E0L14_RS06985 (E0L14_06985) | radA | 1597055..1598422 (-) | 1368 | WP_005784538.1 | DNA repair protein RadA | Machinery gene |
| E0L14_RS06995 (E0L14_06995) | - | 1599080..1600129 (-) | 1050 | WP_008658388.1 | type I asparaginase | - |
| E0L14_RS07000 (E0L14_07000) | thrA | 1600623..1603058 (+) | 2436 | WP_005796412.1 | bifunctional aspartate kinase/homoserine dehydrogenase I | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 50242.96 Da Isoelectric Point: 6.3244
>NTDB_id=349573 E0L14_RS06985 WP_005784538.1 1597055..1598422(-) (radA) [Bacteroides fragilis strain CCUG 4856]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKEVPNKRPVSGIESPKAKPVTLSEIEADEEPRIDMHDEELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLHMPERRILYISGEESARQLKLRADRLTRTSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDTKKLRIELVPVRKVEEAFRTLFG
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKEVPNKRPVSGIESPKAKPVTLSEIEADEEPRIDMHDEELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLHMPERRILYISGEESARQLKLRADRLTRTSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDTKKLRIELVPVRKVEEAFRTLFG
Nucleotide
Download Length: 1368 bp
>NTDB_id=349573 E0L14_RS06985 WP_005784538.1 1597055..1598422(-) (radA) [Bacteroides fragilis strain CCUG 4856]
ATGGCAAAAGAGAAAACCGTTTATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGCAAATGTCCTTCGTG
TGGCGAATGGAATACCTATGTAGAAGAGATTGTTCGCAAGGAAGTTCCGAATAAACGTCCGGTATCTGGCATCGAATCGC
CCAAAGCCAAACCCGTCACCCTGAGCGAGATCGAAGCAGATGAAGAACCCCGCATCGACATGCACGACGAGGAGCTGAAC
CGGGTGCTGGGAGGCGGGCTGGTACCCGGATCGCTGGTACTGATCGGTGGCGAACCCGGCATCGGGAAGTCCACACTGGT
GCTCCAAACCGTGCTCCACATGCCTGAGCGGAGGATACTCTACATCTCGGGAGAAGAGAGCGCAAGGCAACTGAAACTTC
GTGCCGACCGGTTAACCCGAACTTCGAGCGACTGCCTGATTGTCTGCGAAACATCGTTGGAACAGATCTATGTACATATC
AAAAATACACGTCCGGACCTAGTAATCATCGACTCCATACAGACGATATCGACCGAAAGCATCGAATCGTCACCGGGAAG
CATCGCGCAAGTCCGGGAGTGCTCGGCATCCATCCTCCGTTTTGCCAAAGAGACGCATACCCCGGTGTTGCTGATCGGGC
ATATCAACAAAGAAGGCAGCATTGCCGGACCGAAGGTTCTAGAGCACATCGTAGACACCGTACTCCAATTCGAGGGAGAC
CAGCATTATATGTACCGTATTCTGCGCAGCATCAAGAACCGCTTTGGAAGTACCGCTGAATTGGGCATCTATGAGATGCG
TCAAGACGGGCTTCGCCAAGTCAGCAACCCTTCGGAATTGTTACTGTCGCAGGACCACGAAGGCATGAGCGGGGTAGCCA
TCGCATCTGCCATCGAAGGGGTAAGACCCTTCCTGATAGAGACGCAAGCACTTGTCAGCTCTGCGGTTTACGGCAATCCG
CAACGTTCGGCAACGGGATTCGATATTCGCCGCATGAACATGCTGCTGGCCGTATTAGAGAAACGTGTCGGATTTAAGCT
GGCACAAAAAGATGTCTTTCTAAATATTGCCGGAGGACTGAAGGTTAACGACCCTGCCATCGACCTGGCTGTTATCAGTG
CCATCCTTTCATCCAATATGGATGCTGCCATCGAACCTGAGGTTTGCATGGCCGGAGAAATCGGATTATCCGGTGAAATC
CGTCCGGTAAACCGGATCGAACAACGTATCGGTGAAGCTGAGAAGCTCGGGTTCAAACGGTTCATCCTACCTAAATACAA
CATGCAGGGCATCGATACAAAGAAGCTGAGGATAGAACTGGTGCCGGTAAGAAAGGTGGAAGAAGCATTCCGGACGCTCT
TCGGGTGA
ATGGCAAAAGAGAAAACCGTTTATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGCAAATGTCCTTCGTG
TGGCGAATGGAATACCTATGTAGAAGAGATTGTTCGCAAGGAAGTTCCGAATAAACGTCCGGTATCTGGCATCGAATCGC
CCAAAGCCAAACCCGTCACCCTGAGCGAGATCGAAGCAGATGAAGAACCCCGCATCGACATGCACGACGAGGAGCTGAAC
CGGGTGCTGGGAGGCGGGCTGGTACCCGGATCGCTGGTACTGATCGGTGGCGAACCCGGCATCGGGAAGTCCACACTGGT
GCTCCAAACCGTGCTCCACATGCCTGAGCGGAGGATACTCTACATCTCGGGAGAAGAGAGCGCAAGGCAACTGAAACTTC
GTGCCGACCGGTTAACCCGAACTTCGAGCGACTGCCTGATTGTCTGCGAAACATCGTTGGAACAGATCTATGTACATATC
AAAAATACACGTCCGGACCTAGTAATCATCGACTCCATACAGACGATATCGACCGAAAGCATCGAATCGTCACCGGGAAG
CATCGCGCAAGTCCGGGAGTGCTCGGCATCCATCCTCCGTTTTGCCAAAGAGACGCATACCCCGGTGTTGCTGATCGGGC
ATATCAACAAAGAAGGCAGCATTGCCGGACCGAAGGTTCTAGAGCACATCGTAGACACCGTACTCCAATTCGAGGGAGAC
CAGCATTATATGTACCGTATTCTGCGCAGCATCAAGAACCGCTTTGGAAGTACCGCTGAATTGGGCATCTATGAGATGCG
TCAAGACGGGCTTCGCCAAGTCAGCAACCCTTCGGAATTGTTACTGTCGCAGGACCACGAAGGCATGAGCGGGGTAGCCA
TCGCATCTGCCATCGAAGGGGTAAGACCCTTCCTGATAGAGACGCAAGCACTTGTCAGCTCTGCGGTTTACGGCAATCCG
CAACGTTCGGCAACGGGATTCGATATTCGCCGCATGAACATGCTGCTGGCCGTATTAGAGAAACGTGTCGGATTTAAGCT
GGCACAAAAAGATGTCTTTCTAAATATTGCCGGAGGACTGAAGGTTAACGACCCTGCCATCGACCTGGCTGTTATCAGTG
CCATCCTTTCATCCAATATGGATGCTGCCATCGAACCTGAGGTTTGCATGGCCGGAGAAATCGGATTATCCGGTGAAATC
CGTCCGGTAAACCGGATCGAACAACGTATCGGTGAAGCTGAGAAGCTCGGGTTCAAACGGTTCATCCTACCTAAATACAA
CATGCAGGGCATCGATACAAAGAAGCTGAGGATAGAACTGGTGCCGGTAAGAAAGGTGGAAGAAGCATTCCGGACGCTCT
TCGGGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
51.965 |
100 |
0.523 |
| radA | Streptococcus mitis SK321 |
48.352 |
100 |
0.484 |
| radA | Streptococcus mitis NCTC 12261 |
48.352 |
100 |
0.484 |
| radA | Streptococcus pneumoniae Rx1 |
48.352 |
100 |
0.484 |
| radA | Streptococcus pneumoniae D39 |
48.352 |
100 |
0.484 |
| radA | Streptococcus pneumoniae R6 |
48.352 |
100 |
0.484 |
| radA | Streptococcus pneumoniae TIGR4 |
48.352 |
100 |
0.484 |