Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HR50_RS06670 Genome accession   NZ_CP036550
Coordinates   1542544..1543911 (-) Length   455 a.a.
NCBI ID   WP_005784538.1    Uniprot ID   A0A015YPZ3
Organism   Bacteroides fragilis strain DCMOUH0042B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1537544..1548911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR50_RS06655 (HR50_006655) - 1539879..1540475 (-) 597 WP_011202071.1 response regulator transcription factor -
  HR50_RS06660 (HR50_006660) - 1540483..1542072 (-) 1590 WP_005796417.1 NAD(P)/FAD-dependent oxidoreductase -
  HR50_RS06665 (HR50_006665) - 1542117..1542488 (-) 372 WP_005784536.1 GxxExxY protein -
  HR50_RS06670 (HR50_006670) radA 1542544..1543911 (-) 1368 WP_005784538.1 DNA repair protein RadA Machinery gene
  HR50_RS06680 (HR50_006680) - 1544569..1545618 (-) 1050 WP_005796414.1 asparaginase -
  HR50_RS06685 (HR50_006685) thrA 1546112..1548547 (+) 2436 WP_005796412.1 bifunctional aspartate kinase/homoserine dehydrogenase I -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50242.96 Da        Isoelectric Point: 6.3244

>NTDB_id=349558 HR50_RS06670 WP_005784538.1 1542544..1543911(-) (radA) [Bacteroides fragilis strain DCMOUH0042B]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKEVPNKRPVSGIESPKAKPVTLSEIEADEEPRIDMHDEELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLHMPERRILYISGEESARQLKLRADRLTRTSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDTKKLRIELVPVRKVEEAFRTLFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=349558 HR50_RS06670 WP_005784538.1 1542544..1543911(-) (radA) [Bacteroides fragilis strain DCMOUH0042B]
ATGGCAAAAGAGAAAACCGTTTATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGCAAATGTCCTTCGTG
TGGCGAATGGAATACCTATGTAGAAGAGATTGTCCGCAAGGAAGTTCCGAATAAACGTCCGGTGTCTGGCATCGAATCGC
CCAAAGCCAAACCCGTCACCCTGAGCGAGATCGAAGCAGATGAAGAACCCCGCATCGACATGCACGACGAGGAGCTGAAC
CGGGTACTGGGAGGCGGGCTGGTACCCGGATCGCTGGTACTGATCGGTGGCGAACCCGGCATCGGGAAGTCCACACTGGT
GCTTCAAACCGTGCTCCACATGCCTGAGCGGAGGATACTCTACATCTCGGGAGAAGAGAGCGCAAGGCAACTGAAACTTC
GTGCCGACCGGTTAACCCGGACTTCGAGCGACTGTCTGATTGTCTGCGAAACATCGTTGGAACAGATCTATGTACATATC
AAAAATACACGTCCGGACCTAGTAATCATCGACTCCATACAGACGATATCGACCGAAAGCATCGAATCGTCACCGGGAAG
CATCGCGCAAGTCCGGGAGTGCTCGGCATCCATCCTCCGTTTTGCCAAAGAGACGCATACCCCGGTGTTGCTGATCGGGC
ATATCAACAAAGAAGGCAGCATTGCCGGACCGAAGGTTCTAGAGCACATCGTAGACACCGTACTCCAATTCGAGGGAGAC
CAGCATTATATGTACCGTATTCTGCGCAGCATCAAGAACCGCTTTGGAAGTACCGCTGAATTGGGCATCTATGAGATGCG
TCAAGACGGGCTTCGCCAAGTCAGCAACCCTTCGGAATTGTTACTGTCGCAGGACCACGAAGGCATGAGCGGGGTAGCCA
TCGCATCTGCCATCGAAGGGGTAAGACCCTTCCTGATAGAGACGCAAGCACTTGTCAGCTCTGCGGTTTACGGCAATCCG
CAACGTTCGGCAACGGGATTCGATATTCGCCGCATGAACATGCTGCTGGCCGTATTAGAGAAACGTGTCGGATTTAAGCT
GGCACAAAAAGATGTCTTTCTAAATATTGCCGGAGGACTGAAGGTTAACGACCCTGCCATCGACCTGGCTGTTATCAGTG
CCATCCTTTCATCCAATATGGATGCTGCCATCGAACCTGAGGTTTGCATGGCCGGAGAAATCGGATTATCCGGTGAAATC
CGTCCGGTAAACCGGATCGAACAACGTATCGGTGAAGCTGAGAAGCTCGGGTTCAAACGGTTCATCCTACCTAAATACAA
CATGCAGGGCATCGATACAAAGAAGCTGAGGATAGAACTGGTTCCGGTAAGAAAGGTGGAAGAAGCATTCCGGACGCTCT
TCGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A015YPZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.965

100

0.523
  radA Streptococcus mitis SK321

48.352

100

0.484
  radA Streptococcus mitis NCTC 12261

48.352

100

0.484
  radA Streptococcus pneumoniae Rx1

48.352

100

0.484
  radA Streptococcus pneumoniae D39

48.352

100

0.484
  radA Streptococcus pneumoniae R6

48.352

100

0.484
  radA Streptococcus pneumoniae TIGR4

48.352

100

0.484

Multiple sequence alignment