Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GJD96_RS07300 Genome accession   NZ_CP046009
Coordinates   1162666..1163181 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 1919D62     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157666..1168181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD96_RS07255 (GJD96_07270) csrA 1158253..1158438 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GJD96_RS07285 (GJD96_07300) yqaB 1159896..1160462 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GJD96_RS07290 (GJD96_07305) yqaA 1160459..1160887 (+) 429 WP_001287454.1 YqaA family protein -
  GJD96_RS07295 (GJD96_07310) gshA 1160960..1162516 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GJD96_RS07300 (GJD96_07315) luxS 1162666..1163181 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GJD96_RS07305 (GJD96_07320) emrB 1163245..1164783 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GJD96_RS07310 (GJD96_07325) emrA 1164800..1165972 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GJD96_RS07315 (GJD96_07330) emrR 1166099..1166629 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GJD96_RS07320 (GJD96_07335) ygaH 1166720..1167055 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  GJD96_RS07325 (GJD96_07340) ygaZ 1167045..1167782 (-) 738 WP_096310194.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=349524 GJD96_RS07300 WP_001130211.1 1162666..1163181(+) (luxS) [Escherichia coli strain 1919D62]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=349524 GJD96_RS07300 WP_001130211.1 1162666..1163181(+) (luxS) [Escherichia coli strain 1919D62]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731