Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GJD95_RS19935 | Genome accession | NZ_CP046006 |
| Coordinates | 3850729..3851169 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain 1919D3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3845729..3856169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJD95_RS19915 (GJD95_19915) | aroP | 3846727..3848100 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| GJD95_RS19920 (GJD95_19920) | ampE | 3848143..3848997 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| GJD95_RS19925 (GJD95_19925) | ampD | 3848994..3849545 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GJD95_RS19930 (GJD95_19930) | nadC | 3849633..3850526 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GJD95_RS19935 (GJD95_19935) | pilA | 3850729..3851169 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| GJD95_RS19940 (GJD95_19940) | pilB | 3851179..3852564 (+) | 1386 | WP_001025149.1 | type II secretion system protein GspE | Machinery gene |
| GJD95_RS19945 (GJD95_19945) | hofC | 3852554..3853756 (+) | 1203 | WP_000157236.1 | protein transport protein HofC | - |
| GJD95_RS19950 (GJD95_19950) | guaC | 3853791..3854834 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| GJD95_RS24115 | - | 3854990..3855034 (-) | 45 | WP_120795372.1 | protein YacM | - |
| GJD95_RS19955 (GJD95_19955) | coaE | 3855059..3855679 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=349481 GJD95_RS19935 WP_000360904.1 3850729..3851169(+) (pilA) [Escherichia coli strain 1919D3]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=349481 GJD95_RS19935 WP_000360904.1 3850729..3851169(+) (pilA) [Escherichia coli strain 1919D3]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |