Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GJD95_RS10035 Genome accession   NZ_CP046006
Coordinates   1786051..1787478 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain 1919D3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1781051..1792478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD95_RS10005 (GJD95_10005) yeeZ 1781106..1781930 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GJD95_RS10010 (GJD95_10010) yeeY 1781976..1782905 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  GJD95_RS10015 (GJD95_10015) yoeI 1783120..1783182 (+) 63 WP_010723108.1 membrane protein YoeI -
  GJD95_RS10020 (GJD95_10020) plaP 1783172..1784530 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GJD95_RS10025 (GJD95_10025) tsuA 1784709..1785767 (+) 1059 WP_032223502.1 thiosulfate utilization transporter TsuA/YeeE -
  GJD95_RS10030 (GJD95_10030) tsuB 1785781..1786008 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GJD95_RS10035 (GJD95_10035) sbcB 1786051..1787478 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  GJD95_RS10040 (GJD95_10040) dacD 1787687..1788853 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GJD95_RS10045 (GJD95_10045) sbmC 1788972..1789445 (+) 474 WP_089565908.1 DNA gyrase inhibitor SbmC -
  GJD95_RS10050 (GJD95_10050) yeeA 1789643..1790701 (+) 1059 WP_001200891.1 FUSC family protein -
  GJD95_RS10055 (GJD95_10055) tmaR 1790873..1791202 (+) 330 WP_000450409.1 DUF496 family protein -
  GJD95_RS24650 (GJD95_10060) - 1791303..1791557 (-) 255 Protein_1649 EutP/PduV family microcompartment system protein -
  GJD95_RS10065 (GJD95_10065) - 1791539..1791685 (+) 147 Protein_1650 transposase domain-containing protein -
  GJD95_RS10070 (GJD95_10070) - 1791974..1792054 (-) 81 Protein_1651 hypothetical protein -
  GJD95_RS10075 (GJD95_10075) yeeW 1792100..1792294 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=349455 GJD95_RS10035 WP_000980607.1 1786051..1787478(-) (sbcB) [Escherichia coli strain 1919D3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=349455 GJD95_RS10035 WP_000980607.1 1786051..1787478(-) (sbcB) [Escherichia coli strain 1919D3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment